View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11826_low_4 (Length: 746)
Name: NF11826_low_4
Description: NF11826
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11826_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 675; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 675; E-Value: 0
Query Start/End: Original strand, 19 - 733
Target Start/End: Original strand, 41011900 - 41012616
Alignment:
| Q |
19 |
acataagtcaatatgtacaaattcatttatcaatgattaacatcatctaaacgacatttttctttaacttaatgaaatgaatcaaaagttactagaatga |
118 |
Q |
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| T |
41011900 |
acataagtcaatatgtacaaattcatttatcaatgattaacatcatctaaacgacatttttctttaacttaatgaaatgaatcaaaagttactagaatga |
41011999 |
T |
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| Q |
119 |
aattaatcaaaagttactaaaatgaaactaatcaaaagttactagattaaaagctatttaatcgaagaatacatcagtggatttatcctttctttccagt |
218 |
Q |
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| T |
41012000 |
aattaatcaaaagttactaaaatgaaactaatcaaaagttactagattaaaagctatttaatcgaagaatacatcagtggatttatcctttctttccagt |
41012099 |
T |
|
| Q |
219 |
gttaccacatttgccaacaacgatgatggaga-ggaaaaaacaactccattcatttatgttttcaatcaaacttccaaattcttgtcagaaaccttcagt |
317 |
Q |
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| T |
41012100 |
gttaccacatttgccaacaacgatgatggagagggaaaaaaaaactccattcatttatgttttcaatcaaacttccaaattcttgtcagaaaccttcagt |
41012199 |
T |
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| Q |
318 |
aagtgcaaaagtacgaccggctaatggagaaggcaatgcacttacagcttgttgaatttcctgaatatcataaagcacaaaacggtgcataagcattcca |
417 |
Q |
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| T |
41012200 |
aagtgcaaaagtacgaccggctaatggaggaggcaatgcacttacagcttgttgaatttcctgaatatcataaagcacaaaacggtgcataagcattcca |
41012299 |
T |
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| Q |
418 |
acgaaaaaacttacctggagaaaactaatattgtgctaaaagcaacatggtattaatttcaatcttttggaaatattgaaagcaacttgaatttagattc |
517 |
Q |
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| T |
41012300 |
acg-aaaaacttacctggagaaaactaatattgtgctaaaagcaacatggtattaatttcaatcttttggaaatattgaaagcaacttgaatttagattc |
41012398 |
T |
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| Q |
518 |
aggatgtgaaaaagcatggcgtggt--cattacagtcaagagattggagtcattagacgaaaatcagacaattcacattctgagtttgtgttttaaatct |
615 |
Q |
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| T |
41012399 |
aggatgtgaaaaagcatggcgtggtcacattacagtcaagagattggagtcattagacgaaaatcagacagttcacattctgagtttgtgttttaaatct |
41012498 |
T |
|
| Q |
616 |
taagttattgaattgacatgagttgttagattttcatcaaatgacaccgatcgcatgactgtagttactaatatgctcactcagaacaaggttttgggag |
715 |
Q |
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| T |
41012499 |
taagttaatgaattgacatgagttgttagattttcatcaaatgacaccgatcgcatgactgtagttactaatatgctcactcagaacaaggttttgggag |
41012598 |
T |
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| Q |
716 |
gggtgatttattcttctc |
733 |
Q |
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| T |
41012599 |
gggtgatttattcttctc |
41012616 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 164; Significance: 3e-87; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 164; E-Value: 3e-87
Query Start/End: Original strand, 183 - 450
Target Start/End: Original strand, 12111038 - 12111302
Alignment:
| Q |
183 |
aagaatacatcagtggatttatcctttctttccagtgttaccacatttgccaacaacgatgatggagaggaaaaaacaactccattcatttatgttttca |
282 |
Q |
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|||| |||||||| ||||||||||||| || || | || |||||||||||||||| |||||||||| ||||||||||||||||||||||||||| |||| |
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| T |
12111038 |
aagagtacatcaggggatttatccttttattgcact-ttcccacatttgccaacaatgatgatggag-ggaaaaaacaactccattcatttatgtgttca |
12111135 |
T |
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| Q |
283 |
atcaaacttccaaattcttgtcagaaaccttcagtaagtgcaaaagtacgaccggctaatggagaaggcaatgcacttacagcttgttgaatttcctgaa |
382 |
Q |
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||||||||||||| || || |||||||||||||||||||||||||||||||||||||||||| | ||||||||||| |||||||||||||||||||||| |
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| T |
12111136 |
atcaaacttccaacttattttcagaaaccttcagtaagtgcaaaagtacgaccggctaatggtggaggcaatgcaccaacagcttgttgaatttcctgaa |
12111235 |
T |
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| Q |
383 |
tatcataaagcacaaaacggtgcataagcattccaacgaaaaaacttacctggagaaaactaatattg |
450 |
Q |
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| T |
12111236 |
tatcat-aagcacaaaatggtgcatcagcattccaacgaaaaaacataactggagaaaactaatattg |
12111302 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 546 - 716
Target Start/End: Original strand, 12111393 - 12111561
Alignment:
| Q |
546 |
tacagtcaagagattggagtcattagacgaaaatcagacaattcacattctgagtttgtgttttaaatcttaagttattgaattgacatgagttgttaga |
645 |
Q |
| |
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|||||||| ||| ||||| ||||| | |||||||||||| |||||||||||| || ||| ||||||||| || ||| |||||||||| |||| |||||| |
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| T |
12111393 |
tacagtcatcagactggagccattacatgaaaatcagacagttcacattctgactt-gtgatttaaatct-aatttactgaattgacacgagtcgttaga |
12111490 |
T |
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| Q |
646 |
ttttcatcaaatgacaccgatcgcatgactgtagttactaatatgctcactcagaacaaggttttgggagg |
716 |
Q |
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|||||||||| |||||| ||| |||||||| ||||||| || | |||||| | | ||||||||||||||| |
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| T |
12111491 |
ttttcatcaatcgacaccaatcacatgactgcagttactgatgtactcactaaaaccaaggttttgggagg |
12111561 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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