View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11826_low_44 (Length: 286)
Name: NF11826_low_44
Description: NF11826
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11826_low_44 |
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Alignment Details
Target: chr4 (Bit Score: 264; Significance: 1e-147; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 1 - 268
Target Start/End: Original strand, 43756336 - 43756603
Alignment:
| Q |
1 |
tgtgtgttttcttgattgagaaggcattgagtaagcttcccactggggaagagcaaatacttgcaatatttgatctgagaggttttggtccagaaaatgc |
100 |
Q |
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| T |
43756336 |
tgtgtgttttcttgattgagaaggcattgagtaagcttcccactggggaagagcaaatacttgcaatatttgatctgagaggttttggtccagaaaatgc |
43756435 |
T |
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| Q |
101 |
tgattttaaattcttggcattcttggtaatgttttttctactatctgtcaaatatttttagttgaaaaatatgcagtttcatccccgatattgcttgaaa |
200 |
Q |
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| T |
43756436 |
tgattttaaattcttggcattcttggtaatgttttttctactatctgtcaaatatttttagttgaaaaatatgcagtttcatccccgatattgcttgaaa |
43756535 |
T |
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| Q |
201 |
taaaagctcaaaagcatcataaaataaaatctaatatttctttatttttggcagtttaatgtattcta |
268 |
Q |
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| T |
43756536 |
taaaagttcaaaagcatcataaaataaaatctaatatttctttatttttggcagtttaatgtattcta |
43756603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 3 - 155
Target Start/End: Original strand, 43761337 - 43761488
Alignment:
| Q |
3 |
tgtgttttcttgattgagaaggcattgagtaagcttcccactggggaagagcaaatacttgcaatatttgatctgagaggttttggtccagaaaatgctg |
102 |
Q |
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| T |
43761337 |
tgtgttttcttaattgagaaggcattgagtaagcttccaactgggaaagaacagatacttggaatatttgatcttagaggttttggtacagaaaatgctg |
43761436 |
T |
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| Q |
103 |
attttaaattcttggcattcttggtaatgttttttctactatctgtcaaatat |
155 |
Q |
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| T |
43761437 |
atcttaaatacttaacattcttggt-atgtttcgtttactatctgccaaatat |
43761488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 99; Significance: 7e-49; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 1 - 168
Target Start/End: Original strand, 13333396 - 13333565
Alignment:
| Q |
1 |
tgtgtgttttcttgattgagaaggcattgagtaagcttcccactggggaagagcaaatacttgcaatatttgatctgagaggttttggtccagaaaatgc |
100 |
Q |
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||||||||||||| ||||||||||||||||||||| | |||||||||||||||||||| |||||||||||||||| ||||||||||||| ||||||||| |
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| T |
13333396 |
tgtgtgttttcttaattgagaaggcattgagtaagttgcccactggggaagagcaaatgtttgcaatatttgatcttagaggttttggtctagaaaatgc |
13333495 |
T |
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| Q |
101 |
tgattttaaattcttggcattcttggtaatg--ttttttctactatctgtcaaatatttttagttgaaaa |
168 |
Q |
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| T |
13333496 |
tgatcttaaatacttgaaattcttggtaatgttttttttatactatctacgaaatatttttagttgaaaa |
13333565 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 5 - 165
Target Start/End: Complemental strand, 13334924 - 13334761
Alignment:
| Q |
5 |
tgttttcttgattgagaaggcattgagtaagcttcccactggggaagagcaaatacttgcaatatttgatctgagaggttttggtccagaaaatgctgat |
104 |
Q |
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||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||| |
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| T |
13334924 |
tgttttcttaattgagaaggcattgagtaagctttccactggggaagagcaaatacttgcaatatttgatcttagaggttttggtcctgaaaatgctgat |
13334825 |
T |
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| Q |
105 |
tttaaattcttggcattcttggtaatg---ttttttctactatctgtcaaatatttttagttga |
165 |
Q |
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| T |
13334824 |
ctcaaatacttgaattttttggaaatgtatttttttatactatctaccaaatatttttagttga |
13334761 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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