View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11826_low_46 (Length: 276)
Name: NF11826_low_46
Description: NF11826
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11826_low_46 |
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Alignment Details
Target: chr4 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 19 - 266
Target Start/End: Complemental strand, 39344246 - 39344000
Alignment:
| Q |
19 |
atatgatataagatatgttttgaaccggatcaaattgaagtttccctcataaagcatatatccttgggtacattaaaaaccgaggaatttatgccaaaat |
118 |
Q |
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| T |
39344246 |
atatgatataagatatgttttgaaccggatcaaattaaagtttccctcataaagcatatatccttgggtacattaaaaaccgaggaatttatgccaaaat |
39344147 |
T |
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| Q |
119 |
ttccggtcgacatgcctatacatagagacttgttcttcttagaaatgtacacatttcgtcgactaaaatgttggaatgcttgtaggtacatcccactaat |
218 |
Q |
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| T |
39344146 |
ttctggtcgacatgcctatacatagagacttgttcttcttagaaaggtacacatttcgtcgactaaaatgttggaatgcttgtaggtacatcccactaa- |
39344048 |
T |
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| Q |
219 |
actgtctatgaccatcgccgccattaatgtccaccttccgccttcttc |
266 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
39344047 |
actgtctatgaccatcgcggccattaatgtccaccttccgccttcttc |
39344000 |
T |
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