View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11826_low_5 (Length: 712)
Name: NF11826_low_5
Description: NF11826
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11826_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 664; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 664; E-Value: 0
Query Start/End: Original strand, 9 - 696
Target Start/End: Original strand, 27090903 - 27091589
Alignment:
| Q |
9 |
aatgaggcagaacaacgtatcattcaaatctataaaataatatgtaaaaagtgtgctaaagattttgctagtattatccaaacttgaaacatatatttac |
108 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
27090903 |
aatgaggcagaacaacgtatcattcaaatctataaaataatatgtaaaaagtgtgctaaagattttgctagtattatccaaacttgaaa-atatatttac |
27091001 |
T |
|
| Q |
109 |
caaagtgttttacaagtaaaattaccttgattccattcttgaggaaacatgctatgctttgcacagaagtgggccttggagtgagacttagggagagaat |
208 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
27091002 |
caaagtgttttacaagtaaaattaccttgattccattcttgaggaaacatgctatgctttgcacagaagtgggccttggagtgagacttagtgagagaat |
27091101 |
T |
|
| Q |
209 |
catgaggggaagaaggataagatgatgataagacaaaaggattatggttattaacatcctcatcttcttcatagttatagctatgttgtaattgatgctc |
308 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27091102 |
catgaggggaagaaggataagatgatgataagacaaaaggattatggttattaacatcctcatcttcttcatagttatagctatgttgtaattgatgctc |
27091201 |
T |
|
| Q |
309 |
acacttgccatgagttcccatccaagttggaaataaagttgatatctcattatctatcattgcagcaatctttaatggttccaagtgattgatttcaagt |
408 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27091202 |
acacttgccatgagtacccatccaagttggaaataaagttgatatctcattatctatcattgcagcaatctttaatggttccaagtgattgatttcaagt |
27091301 |
T |
|
| Q |
409 |
tcttctaccatctccattgccactttaatagcagtgtcgttttttgtatcaaatggaaagaatatatgccttgtttgccctgtattaaaaaattacttca |
508 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
27091302 |
tcttctaccatctccattgccactttaatagcagtgtcgttttttgtatcaaatggaaagaatatatgcctcgtttgccctgtattaaaaaattacttca |
27091401 |
T |
|
| Q |
509 |
aataagacattttaatttgttgtaagatataattttctggatttcactctctattagagaatcagtcacacaaaacactcaccattagagaaaggaaaaa |
608 |
Q |
| |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27091402 |
aataagacattttaatttgttgtaaggtataattttctggatttcactctctattagagaatcagtcacacaaaacactcaccattagagaaaggaaaaa |
27091501 |
T |
|
| Q |
609 |
agacattacaatcaaagatatagagggtatacgacggcgaactaggccatgaaatcaattttatttgtgcaattattgtcgaggttgt |
696 |
Q |
| |
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| T |
27091502 |
agacattacaatcaaagatatagagggtatacgacggcgaactaggccatgaaatcaattttatttgtgcaattattgtcgaggttgt |
27091589 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 664; E-Value: 0
Query Start/End: Original strand, 9 - 696
Target Start/End: Complemental strand, 27187398 - 27186712
Alignment:
| Q |
9 |
aatgaggcagaacaacgtatcattcaaatctataaaataatatgtaaaaagtgtgctaaagattttgctagtattatccaaacttgaaacatatatttac |
108 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
27187398 |
aatgaggcagaacaacgtatcattcaaatctataaaataatatgtaaaaagtgtgctaaagattttgctagtattatccaaacttgaaa-atatatttac |
27187300 |
T |
|
| Q |
109 |
caaagtgttttacaagtaaaattaccttgattccattcttgaggaaacatgctatgctttgcacagaagtgggccttggagtgagacttagggagagaat |
208 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
27187299 |
caaagtgttttacaagtaaaattaccttgattccattcttgaggaaacatgctatgctttgcacagaagtgggccttggagtgagacttagtgagagaat |
27187200 |
T |
|
| Q |
209 |
catgaggggaagaaggataagatgatgataagacaaaaggattatggttattaacatcctcatcttcttcatagttatagctatgttgtaattgatgctc |
308 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27187199 |
catgaggggaagaaggataagatgatgataagacaaaaggattatggttattaacatcctcatcttcttcatagttatagctatgttgtaattgatgctc |
27187100 |
T |
|
| Q |
309 |
acacttgccatgagttcccatccaagttggaaataaagttgatatctcattatctatcattgcagcaatctttaatggttccaagtgattgatttcaagt |
408 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27187099 |
acacttgccatgagtacccatccaagttggaaataaagttgatatctcattatctatcattgcagcaatctttaatggttccaagtgattgatttcaagt |
27187000 |
T |
|
| Q |
409 |
tcttctaccatctccattgccactttaatagcagtgtcgttttttgtatcaaatggaaagaatatatgccttgtttgccctgtattaaaaaattacttca |
508 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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|
| T |
27186999 |
tcttctaccatctccattgccactttaatagcagtgtcgttttttgtatcaaatggaaagaatatatgcctcgtttgccctgtattaaaaaattacttca |
27186900 |
T |
|
| Q |
509 |
aataagacattttaatttgttgtaagatataattttctggatttcactctctattagagaatcagtcacacaaaacactcaccattagagaaaggaaaaa |
608 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27186899 |
aataagacattttaatttgttgtaaggtataattttctggatttcactctctattagagaatcagtcacacaaaacactcaccattagagaaaggaaaaa |
27186800 |
T |
|
| Q |
609 |
agacattacaatcaaagatatagagggtatacgacggcgaactaggccatgaaatcaattttatttgtgcaattattgtcgaggttgt |
696 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27186799 |
agacattacaatcaaagatatagagggtatacgacggcgaactaggccatgaaatcaattttatttgtgcaattattgtcgaggttgt |
27186712 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 50; Significance: 3e-19; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 329 - 498
Target Start/End: Complemental strand, 9909780 - 9909611
Alignment:
| Q |
329 |
tccaagttggaaataaagttgatatctcattatctatcattgcagcaatctttaatggttccaagtgattgatttcaagttcttctaccatctccattgc |
428 |
Q |
| |
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|||| ||||||| || |||||||||||| | || ||||| ||||||||| || ||||||||||| | | ||||||||||||| |||||||| |||| |
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| T |
9909780 |
tccatgttggaactatagttgatatctcttcttcaatcatctcagcaatctctattggttccaagtcactaatttcaagttctttgaccatctcatttgc |
9909681 |
T |
|
| Q |
429 |
cactttaatagcagtgtcgttttttgtatcaaatggaaagaatatatgccttgtttgccctgtattaaaa |
498 |
Q |
| |
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|| | ||| |||||||| ||||| || |||||||| ||| |||||| ||||| ||||||||||||||| |
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|
| T |
9909680 |
aacctcaatggcagtgtcctttttggtgtcaaatgggaagtatatatttcttgtgtgccctgtattaaaa |
9909611 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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