View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11826_low_7 (Length: 682)
Name: NF11826_low_7
Description: NF11826
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11826_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 643; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 643; E-Value: 0
Query Start/End: Original strand, 18 - 672
Target Start/End: Complemental strand, 22571797 - 22571144
Alignment:
| Q |
18 |
actatggaaagtgacttcatgacagaatatgttgtcacgagatggtatagggctcctgaattgttgttgaactcctcagattacacctctgcaatagatg |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22571797 |
actatggaaagtgacttcatgacagaatatgttgtcacgagatggtatagggctcctgaattgttgttgaactcctcagattacacctctgcaatagatg |
22571698 |
T |
|
| Q |
118 |
tctggtctgttggttgcatttttatggagcttatgaataaaaagcctctgtttcctggcaaagatcatgtgcatcaaatgcgcttattgacagaggtaag |
217 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22571697 |
tctggtctgt-ggttgcatttttatggagcttatgaataaaaagcctctgtttcctggcaaagatcatgtgcatcaaatgcgcttattgacagaggtaag |
22571599 |
T |
|
| Q |
218 |
actataggaatcagcataactaatcattttcttaaaaaatttgcattatcttaaacgacacttataatgtggcggatggagtaaaacattacactaaatg |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22571598 |
actataggaatcagcataactaatcattttcttaaaaaatttgcattatcttaaacgacacttataatgtggcggatggagtaaaacattacactaaatg |
22571499 |
T |
|
| Q |
318 |
ttttctctagttgctacttactcatataagttgatattcatataaatatttcattattaatgccttgaatacaatcaatagtttaatcataaaagtagta |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22571498 |
ttttctctagttgctacttactcatataagttgatattcatataaatatttcattattaatgccttgaatacaatcaatagtttaatcataaaagtagta |
22571399 |
T |
|
| Q |
418 |
atatatcatatatgcttaattgtttacacttgttgtttttctacagcttcttggcactccaactgacgctgatgtggggttagtaaaaaatgacgatgcg |
517 |
Q |
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| T |
22571398 |
atatatcatatatgcttaattgcttacacttgttgtttttctacagcttcttggcactccaactgacgctgatgtggggttagtaaaaaatgacgatgcg |
22571299 |
T |
|
| Q |
518 |
agaagatatatccgacaacttcctcagtatcctcgtcaacctttgaatagggttttcccccatgttcatcccttagccattgatcttgtcgataaaatgt |
617 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22571298 |
agaagatatatccgacaacttcctcagtatcctcgtcaacctttgaatagggttttcccccatgttcatcccttagccattgatcttgtcgataaaatgt |
22571199 |
T |
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| Q |
618 |
tgacaattgatcctaccagaagaattacaggtaattttctcatccttgcattcat |
672 |
Q |
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| T |
22571198 |
tgacaattgatcctaccagaagaattacaggtaattttctcatccttgcattcat |
22571144 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 108 - 193
Target Start/End: Original strand, 34418693 - 34418778
Alignment:
| Q |
108 |
gcaatagatgtctggtctgttggttgcatttttatggagcttatgaataaaaagcctctgtttcctggcaaagatcatgtgcatca |
193 |
Q |
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| T |
34418693 |
gcaattgatgtatggtctgttggttgtattttcatggaactgatggatcgaaagcctttgtttcctggcagagatcacgtgcatca |
34418778 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 30 - 187
Target Start/End: Original strand, 22664371 - 22664528
Alignment:
| Q |
30 |
gacttcatgacagaatatgttgtcacgagatggtatagggctcctgaattgttgttgaactcctcagattacacctctgcaatagatgtctggtctgttg |
129 |
Q |
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| T |
22664371 |
gacttcatgacagagtatgttgtgactcgttggtatagagcccctgaattgctactgaactgttcagaatatactgctgctattgatgtatggtcggttg |
22664470 |
T |
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| Q |
130 |
gttgcatttttatggagcttatgaataaaaagcctctgtttcctggcaaagatcatgt |
187 |
Q |
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| T |
22664471 |
gttgcattttgatggagataattagaagggagcctctgtttcctggtaaagattatgt |
22664528 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 30 - 187
Target Start/End: Original strand, 22668850 - 22669007
Alignment:
| Q |
30 |
gacttcatgacagaatatgttgtcacgagatggtatagggctcctgaattgttgttgaactcctcagattacacctctgcaatagatgtctggtctgttg |
129 |
Q |
| |
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|||||||||||||| |||||||| || | |||||||| || ||||||||| | |||||| ||||| || || |||| || ||||| ||||| |||| |
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| T |
22668850 |
gacttcatgacagagtatgttgtgactcgttggtatagagcccctgaattgctactgaactgttcagaatatactgctgctattgatgtatggtcggttg |
22668949 |
T |
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| Q |
130 |
gttgcatttttatggagcttatgaataaaaagcctctgtttcctggcaaagatcatgt |
187 |
Q |
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|||||||||| |||||| | || | | |||||||||||||||| |||||| |||| |
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| T |
22668950 |
gttgcattttgatggagataattagaagggagcctctgtttcctggtaaagattatgt |
22669007 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 93 - 136
Target Start/End: Original strand, 2608283 - 2608326
Alignment:
| Q |
93 |
tcagattacacctctgcaatagatgtctggtctgttggttgcat |
136 |
Q |
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||||| ||||| |||||||| ||||||||||||||||||||||| |
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| T |
2608283 |
tcagagtacacatctgcaattgatgtctggtctgttggttgcat |
2608326 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 232 - 286
Target Start/End: Original strand, 35101594 - 35101648
Alignment:
| Q |
232 |
cataactaatcattttcttaaaaaatttgcattatcttaaacgacacttataatg |
286 |
Q |
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||||||||||||||||||||||| | ||||||| ||||||| ||||||| |||| |
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| T |
35101594 |
cataactaatcattttcttaaaatacgtgcattaacttaaacaacacttacaatg |
35101648 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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