View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11826_low_8 (Length: 668)
Name: NF11826_low_8
Description: NF11826
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11826_low_8 |
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Alignment Details
Target: chr8 (Bit Score: 326; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 18 - 436
Target Start/End: Complemental strand, 14160379 - 14159943
Alignment:
| Q |
18 |
aatacatactgccacaaattctaacttaaaggcagtacaagctgcttacaaaacgacataaggttcgaaagtaataaaattccaacataaaggctgtaca |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||| |
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|
| T |
14160379 |
aatacatactgccacaaattctaacttaaaggcagtacaagctgcttacaaaacgacataaggtttgaaagtaataaaattccaacataaaggcagtaca |
14160280 |
T |
|
| Q |
118 |
aaagctgcatacaaaaagacataaggttccaaagtaagacatcacaaaagttgcccaaaaaatacattaaacaaactgtcatccaatatcatggcctcca |
217 |
Q |
| |
|
| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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|
| T |
14160279 |
agagctgcatacaaaaagacattaggttccaaagtaagacatcacaaaagttgcccaaaaaatacattaaacaaactgtcatcaaatatcatggcctcca |
14160180 |
T |
|
| Q |
218 |
tattttcatcttttgtctagcaaagtgagttgttgttgaatatcttgagattgcagcaggttgagaat------------------tttctatatttgat |
299 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||| || | ||||||||| |
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|
| T |
14160179 |
tattttcatcttttgtctagcaaagtgagttgttgttgaatatcttgagcttgcagtaggttgagaatttgcaccagatatatttgttaccatatttgat |
14160080 |
T |
|
| Q |
300 |
gttgcagagacactactagtagcaggctgagtacttgcagcaacattgacttttcaaggtcttcctctaggctttttctgagatgtagcaacagtttggg |
399 |
Q |
| |
|
|||||||||| |||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
14160079 |
gttgcagagatactactagtaacaggctgagtacttgcagcaacattgacttttcgaggtcttcctctaggctttttctgagatgtagcaacagtttggg |
14159980 |
T |
|
| Q |
400 |
tctatgttgcattctgaccaacaccaggcgcaggttg |
436 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||| |
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|
| T |
14159979 |
tctgtgttgcattctgaccaacaccaggcgcaggttg |
14159943 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 434 - 650
Target Start/End: Complemental strand, 14159984 - 14159774
Alignment:
| Q |
434 |
ttgggtttgtgttgcattctgaccagctggaacaacagccgcatgttgtgcaatttggctctgattaggtgggttttgagtctgatttgttggagttgga |
533 |
Q |
| |
|
|||||| |||||||||||||||||| ||| ||| |||| |||||||| |||||||||||||||||| ||||||||||||||||||| ||||||| |
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|
| T |
14159984 |
ttgggtctgtgttgcattctgacca------acaccaggcgcaggttgtgcagtttggctctgattaggtgcgttttgagtctgatttgttacagttgga |
14159891 |
T |
|
| Q |
534 |
attgagggcccactacaagaagttttgttatgaccaggttgtttgcatgtagaacatctagcaggcattccttttctactaacaagtgaagaatctctcg |
633 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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|
| T |
14159890 |
attgagggccctttacaagaagttttgttatgaccaggttgtttgcatgtagaacatctagcgggcattccttttctactaacaagtgaagaatctctcg |
14159791 |
T |
|
| Q |
634 |
ctttctcatcgccatct |
650 |
Q |
| |
|
|||||||||| |||||| |
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|
| T |
14159790 |
ctttctcatcaccatct |
14159774 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 326; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 18 - 436
Target Start/End: Complemental strand, 29705764 - 29705328
Alignment:
| Q |
18 |
aatacatactgccacaaattctaacttaaaggcagtacaagctgcttacaaaacgacataaggttcgaaagtaataaaattccaacataaaggctgtaca |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||| |
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|
| T |
29705764 |
aatacatactgccacaaattctaacttaaaggcagtacaagctgcttacaaaacgacataaggtttgaaagtaataaaattccaacataaaggcagtaca |
29705665 |
T |
|
| Q |
118 |
aaagctgcatacaaaaagacataaggttccaaagtaagacatcacaaaagttgcccaaaaaatacattaaacaaactgtcatccaatatcatggcctcca |
217 |
Q |
| |
|
| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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|
| T |
29705664 |
agagctgcatacaaaaagacattaggttccaaagtaagacatcacaaaagttgcccaaaaaatacattaaacaaactgtcatcaaatatcatggcctcca |
29705565 |
T |
|
| Q |
218 |
tattttcatcttttgtctagcaaagtgagttgttgttgaatatcttgagattgcagcaggttgagaat------------------tttctatatttgat |
299 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||| || | ||||||||| |
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|
| T |
29705564 |
tattttcatcttttgtctagcaaagtgagttgttgttgaatatcttgagcttgcagtaggttgagaatttgcaccagatatatttgttaccatatttgat |
29705465 |
T |
|
| Q |
300 |
gttgcagagacactactagtagcaggctgagtacttgcagcaacattgacttttcaaggtcttcctctaggctttttctgagatgtagcaacagtttggg |
399 |
Q |
| |
|
|||||||||| |||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
29705464 |
gttgcagagatactactagtaacaggctgagtacttgcagcaacattgacttttcgaggtcttcctctaggctttttctgagatgtagcaacagtttggg |
29705365 |
T |
|
| Q |
400 |
tctatgttgcattctgaccaacaccaggcgcaggttg |
436 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
29705364 |
tctgtgttgcattctgaccaacaccaggcgcaggttg |
29705328 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 434 - 650
Target Start/End: Complemental strand, 29705369 - 29705159
Alignment:
| Q |
434 |
ttgggtttgtgttgcattctgaccagctggaacaacagccgcatgttgtgcaatttggctctgattaggtgggttttgagtctgatttgttggagttgga |
533 |
Q |
| |
|
|||||| |||||||||||||||||| ||| ||| |||| |||||||| |||||||||||||||||| ||||||||||||||||||| ||||||| |
|
|
| T |
29705369 |
ttgggtctgtgttgcattctgacca------acaccaggcgcaggttgtgcagtttggctctgattaggtgcgttttgagtctgatttgttacagttgga |
29705276 |
T |
|
| Q |
534 |
attgagggcccactacaagaagttttgttatgaccaggttgtttgcatgtagaacatctagcaggcattccttttctactaacaagtgaagaatctctcg |
633 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29705275 |
attgagggccctttacaagaagttttgttatgaccaggttgtttgcatgtagaacatctagcgggcattccttttctactaacaagtgaagaatctctcg |
29705176 |
T |
|
| Q |
634 |
ctttctcatcgccatct |
650 |
Q |
| |
|
|||||||||| |||||| |
|
|
| T |
29705175 |
ctttctcatcaccatct |
29705159 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 322; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 18 - 436
Target Start/End: Complemental strand, 21423528 - 21423092
Alignment:
| Q |
18 |
aatacatactgccacaaattctaacttaaaggcagtacaagctgcttacaaaacgacataaggttcgaaagtaataaaattccaacataaaggctgtaca |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||| |
|
|
| T |
21423528 |
aatacatactgccacaaattctaacttaaaggcagtacaagctgcttacaaaacgacataaggtttgaaagtaataaaattccaacataaaggcagtaca |
21423429 |
T |
|
| Q |
118 |
aaagctgcatacaaaaagacataaggttccaaagtaagacatcacaaaagttgcccaaaaaatacattaaacaaactgtcatccaatatcatggcctcca |
217 |
Q |
| |
|
| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
21423428 |
agagctgcatacaaaaagacattaggttccaaagtaagacatcacaaaagttgcccaaaaaatacattaaacaaactgtcatcaaatatcatggcctcca |
21423329 |
T |
|
| Q |
218 |
tattttcatcttttgtctagcaaagtgagttgttgttgaatatcttgagattgcagcaggttgagaat------------------tttctatatttgat |
299 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||| || | ||||||||| |
|
|
| T |
21423328 |
tattttcatcttttgtctagcaaagtgagttgttgttgaatatcttgagcttgcagtaggttgagaatttgcaccagatatatttgttaccatatttgat |
21423229 |
T |
|
| Q |
300 |
gttgcagagacactactagtagcaggctgagtacttgcagcaacattgacttttcaaggtcttcctctaggctttttctgagatgtagcaacagtttggg |
399 |
Q |
| |
|
|||||||||| |||||||||| ||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21423228 |
gttgcagagatactactagtaacaggctgagtacttgcagcaacatttacttttcgaggtcttcctctaggctttttctgagatgtagcaacagtttggg |
21423129 |
T |
|
| Q |
400 |
tctatgttgcattctgaccaacaccaggcgcaggttg |
436 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
21423128 |
tctgtgttgcattctgaccaacaccaggcgcaggttg |
21423092 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 434 - 650
Target Start/End: Complemental strand, 21423133 - 21422923
Alignment:
| Q |
434 |
ttgggtttgtgttgcattctgaccagctggaacaacagccgcatgttgtgcaatttggctctgattaggtgggttttgagtctgatttgttggagttgga |
533 |
Q |
| |
|
|||||| |||||||||||||||||| ||| ||| |||| |||||||| |||||||||||||||||| ||||||||||||||||||| ||||||| |
|
|
| T |
21423133 |
ttgggtctgtgttgcattctgacca------acaccaggcgcaggttgtgcagtttggctctgattaggtgcgttttgagtctgatttgttacagttgga |
21423040 |
T |
|
| Q |
534 |
attgagggcccactacaagaagttttgttatgaccaggttgtttgcatgtagaacatctagcaggcattccttttctactaacaagtgaagaatctctcg |
633 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21423039 |
attgagggccctttacaagaagttttgttatgaccaggttgtttgcatgtagaacatctagcgggcattccttttctactaacaagtgaagaatctctcg |
21422940 |
T |
|
| Q |
634 |
ctttctcatcgccatct |
650 |
Q |
| |
|
|||||||||| |||||| |
|
|
| T |
21422939 |
ctttctcatcaccatct |
21422923 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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