View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11827_high_2 (Length: 994)
Name: NF11827_high_2
Description: NF11827
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11827_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 253; Significance: 1e-140; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 1 - 412
Target Start/End: Original strand, 8780275 - 8780683
Alignment:
| Q |
1 |
acaccgagacttttaagaccacaagcaagcaccgaggtaataactagagcatggtgttagatagatccatgagatatgaattggtgagaacattatccat |
100 |
Q |
| |
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||||| ||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
8780275 |
acaccaagacttttaagaccacaagcaagaattgaggtaataactagagcatggtgttagatagatccatgggatatgaattggtgagaacattatccat |
8780374 |
T |
|
| Q |
101 |
gtaatagtgtggatgacttggatccatcaccacaaactgcatgtcctctgaaagcttccagtgccgtttcctttgatgattaataaaccagttgattatt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||| ||||||||||||||| ||||| |
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| T |
8780375 |
gtaatagtgtggatgacttggatccatcaccacaaactgcatgtcctctgaaggcttccagtgccgttttctttgat-tttaataaaccagttgtttatt |
8780473 |
T |
|
| Q |
201 |
tgcttctaatcaacacctgttgaataattaggtaaaaagagaggtgtataaagcaatggtgaaaaatggacaagaatctttcgaagaatcaaggtatgtt |
300 |
Q |
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| T |
8780474 |
tgcttctgattaagacttgttgaataatcaggtgaaatgagaggtttataaagcaatgctgcaaaatgaacaagaatcttccgaagagtcaagctttgtt |
8780573 |
T |
|
| Q |
301 |
gaccaagccatcagttatggcactcatatggcattcaagatcattttcaattatcaagtagaggaaaataactcagcataatttcaaaaaatgcatcacc |
400 |
Q |
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| T |
8780574 |
gaccaagccatcacttaggggactc--atggcattcaagaccattttcaatgaccaagtagaggaaaataactcagcataattttaaaaaatacatcata |
8780671 |
T |
|
| Q |
401 |
gaagatcaaaat |
412 |
Q |
| |
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||| |||||||| |
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| T |
8780672 |
gaatatcaaaat |
8780683 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 171; E-Value: 3e-91
Query Start/End: Original strand, 7 - 223
Target Start/End: Original strand, 8791776 - 8791989
Alignment:
| Q |
7 |
agacttttaagaccacaagcaagcaccgaggtaataactagagcatggtgttagatagatccatgagatatgaattggtgagaacattatccatgtaata |
106 |
Q |
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||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
8791776 |
agacttttaagaccacaagcaagaattgaggtaataactagagcatggtgttagatagatccatgggatatgaattggtgagaacattatccatgtaata |
8791875 |
T |
|
| Q |
107 |
gtgtggatgacttggatccatcaccacaaactgcatgtcctctgaaagcttccagtgccgtttcctttgatgattaataaaccagttgattatttgcttc |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||| ||||||||||| |
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| T |
8791876 |
gtgtggatgacttggatccatcaccacaaactgcatgtcctctgaaggcttccagtgccgtttcctt---tgattaataaaccagttgtttatttgcttc |
8791972 |
T |
|
| Q |
207 |
taatcaacacctgttga |
223 |
Q |
| |
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| T |
8791973 |
tgatcaagacctgttga |
8791989 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 445 - 601
Target Start/End: Original strand, 8780783 - 8780935
Alignment:
| Q |
445 |
aattcatattttgtggtttttcttttgggtcttgatcaatccttgtgtgattgctatttactcattgtctactgatatatttgcatgcatttgcaatgtc |
544 |
Q |
| |
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|||| ||||||||||||||||| ||||||||||||||||||||||||| ||||||| || | ||||| ||||||||||||||||||||| |||||| |
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| T |
8780783 |
aatttatattttgtggtttttcatttgggtcttgatcaatccttgtgttattgctacttggt----gtctaatgatatatttgcatgcatttgtaatgtc |
8780878 |
T |
|
| Q |
545 |
ttggctaaaagtaggattagttttgtcttggtttggcaccacttatcacaaagaata |
601 |
Q |
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| T |
8780879 |
ttggctataaataggattatttttgttttggtttggcaccacttaccaccaagaata |
8780935 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 798 - 887
Target Start/End: Original strand, 8577284 - 8577372
Alignment:
| Q |
798 |
cttaggcaatcttttgataaatgataatgaaggaagatagttgggaaatataaagttcgacacaaggtctgaagcatgagaatggcctaa |
887 |
Q |
| |
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|||| ||||| ||| ||||||||| |||||||||||| ||||| |||||||||| | || | ||||| |||||||||||||| |||||| |
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| T |
8577284 |
cttacgcaatatttcgataaatgaaaatgaaggaagaccgttgg-aaatataaagctagataaaaggtttgaagcatgagaatagcctaa |
8577372 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 798 - 878
Target Start/End: Complemental strand, 33732054 - 33731975
Alignment:
| Q |
798 |
cttaggcaatcttttgataaatgataatgaaggaagatagttgggaaatataaagttcgacacaaggtctgaagcatgaga |
878 |
Q |
| |
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||||||||||||| ||| ||||| ||||||||||||| ||| | |||||||||||| |||| ||||| | |||||||||| |
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| T |
33732054 |
cttaggcaatcttccgatgaatgagaatgaaggaagattgtt-gaaaatataaagttagacaaaaggttttaagcatgaga |
33731975 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 704 - 738
Target Start/End: Original strand, 15148027 - 15148061
Alignment:
| Q |
704 |
aagtagtcttatgacaaactttccatgatcctctt |
738 |
Q |
| |
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|||||||| |||||||||||||||||||||||||| |
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| T |
15148027 |
aagtagtcatatgacaaactttccatgatcctctt |
15148061 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 54; Significance: 2e-21; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 672 - 832
Target Start/End: Complemental strand, 34770693 - 34770539
Alignment:
| Q |
672 |
tgggtagttctcttaggtcttggaatcaatgaaagtagtcttatgacaaactttccatgatcctcttttctttcttttgattagtaaatgcatttgcctt |
771 |
Q |
| |
|
||||||||| |||||||||||||||||| ||| || |||||||| ||||||| ||||||||| ||||||||||||||||| ||||||| | |
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| T |
34770693 |
tgggtagttttcttaggtcttggaatcatgaaaactaatcttatgaaaaacttttcatgatccttatttctttcttttgattataaaatgca------ta |
34770600 |
T |
|
| Q |
772 |
atctatatttaatctcttatcaaaatcttaggcaatcttttgataaatgataatgaaggaa |
832 |
Q |
| |
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||||| ||||| |||||||||||||||| ||||||| |||||||||| |||||||||| |
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| T |
34770599 |
atctagctttaagtacttatcaaaatcttagacaatcttctgataaatgagaatgaaggaa |
34770539 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 220 - 307
Target Start/End: Complemental strand, 34771312 - 34771225
Alignment:
| Q |
220 |
ttgaataattaggtaaaaagagaggtgtataaagcaatggtgaaaaatggacaagaatctttcgaagaatcaaggtatgttgaccaag |
307 |
Q |
| |
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||||||||||| |||||| ||||||| |||||||||||| || ||||||||| | |||||||| |||||||||| ||||||||||| |
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| T |
34771312 |
ttgaataattatgtaaaatgagaggtatataaagcaatgatgtaaaatggactataatctttcaaagaatcaagacttgttgaccaag |
34771225 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 52; Significance: 3e-20; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 678 - 765
Target Start/End: Complemental strand, 19028465 - 19028378
Alignment:
| Q |
678 |
gttctcttaggtcttggaatcaatgaaagtagtcttatgacaaactttccatgatcctcttttctttcttttgattagtaaatgcatt |
765 |
Q |
| |
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|||||||||||||||||||| | |||||||||| |||||||| ||||||| |||||| |||||||||||||||||| ||||||||| |
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| T |
19028465 |
gttctcttaggtcttggaataacggaaagtagtccaatgacaaattttccatcatcctcatttctttcttttgattaggaaatgcatt |
19028378 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 843 - 952
Target Start/End: Complemental strand, 19028304 - 19028195
Alignment:
| Q |
843 |
aaatataaagttcgacacaaggtctgaagcatgagaatggcctaaaagtttttggtgtgtaaaattagatattcgggtttaatgggttaagcctacatga |
942 |
Q |
| |
|
|||| ||||||| ||||||| || | |||||||||||| ||||| | |||| || ||||||| | | |||||||| ||||||||| |||| ||||| |
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|
| T |
19028304 |
aaatttaaagttagacacaaagtttaaagcatgagaataccctaagaattttcggaatgtaaaaatgggtattcgggcttaatgggtaaagctcgcatga |
19028205 |
T |
|
| Q |
943 |
attgtcatga |
952 |
Q |
| |
|
|||||||||| |
|
|
| T |
19028204 |
attgtcatga |
19028195 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 703 - 807
Target Start/End: Original strand, 21453301 - 21453404
Alignment:
| Q |
703 |
aaagtagtcttatgacaaactttccatgatcctcttttctttcttttgattagtaaatgcatttgccttatctatatttaatctcttatcaaaatcttag |
802 |
Q |
| |
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|||||||||||||||||| ||||||||||| || |||||||||||| ||||| |||| || | | | |||| ||||| || ||||||||||||||| |
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| T |
21453301 |
aaagtagtcttatgacaacctttccatgattct-atttctttctttttattaggaaatacaatcacatattctagctttaagcttttatcaaaatcttag |
21453399 |
T |
|
| Q |
803 |
gcaat |
807 |
Q |
| |
|
||||| |
|
|
| T |
21453400 |
gcaat |
21453404 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 702 - 735
Target Start/End: Complemental strand, 28303028 - 28302995
Alignment:
| Q |
702 |
gaaagtagtcttatgacaaactttccatgatcct |
735 |
Q |
| |
|
||||||||||||||| |||||||||||||||||| |
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|
| T |
28303028 |
gaaagtagtcttatggcaaactttccatgatcct |
28302995 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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