View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11827_high_20 (Length: 450)
Name: NF11827_high_20
Description: NF11827
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11827_high_20 |
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Alignment Details
Target: chr5 (Bit Score: 387; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 11 - 433
Target Start/End: Original strand, 10500544 - 10500966
Alignment:
| Q |
11 |
agagagtggaaattttaccgtgaaatcgtcgtatgacaaattggaaagttcaattttgttggaagacaaatggcgggaggaagataggaaggttttttct |
110 |
Q |
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| T |
10500544 |
agagagtggaaattttaccatgaaattgtcgtatgacaaattggaaagttcaattttgttggaagacgaatggcgggaggaagataggaaggttttttct |
10500643 |
T |
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| Q |
111 |
tgcttatggaaaagcccggctccttacaaggtagtagccttctcttggaaggctattctcaactgtatcccatctaggttgaatttagcattgagatacg |
210 |
Q |
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| T |
10500644 |
tgcttatggaaaagcccggctccttccaaggtagtagccttctcttggaaggctattctcaactgtatcccatctaggttgaatttatcattgagatacg |
10500743 |
T |
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| Q |
211 |
ttcttccggaggaggtggagacgatgtgtgttttgtgtggggagggtgaggaatcaacgcttcatttgatgcttcattgtgaagtggcttcgaaaatttg |
310 |
Q |
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| T |
10500744 |
ttcttccggaggaggtggagaagatgtgtgttttgtgtggggagggtgaggaatcaacccttcatttgatgcttcattgtgaagtggcttcgaaagtttg |
10500843 |
T |
|
| Q |
311 |
gtctaagttaatgacttagatggaggtttggttcataaaccctccaaacattttcatccattgagagtgttggagcgggtgggagcataaaaagaggatt |
410 |
Q |
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| T |
10500844 |
gtctaagttaatgacttagatggagatttggttcataaaccctccaaacattttcatccattgagagtgttggagcgggtgggagcataaaaagaggatt |
10500943 |
T |
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| Q |
411 |
aggaaaggattatggttgatttc |
433 |
Q |
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| T |
10500944 |
aggaaaggattatggttgatttc |
10500966 |
T |
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