View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11827_high_22 (Length: 422)
Name: NF11827_high_22
Description: NF11827
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11827_high_22 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 66 - 407
Target Start/End: Original strand, 27794908 - 27795251
Alignment:
| Q |
66 |
ttatattacacaaccagttcctaatttcctcaaattatgatctagctttgtgtgtaattgcaacagaatttttctaatatgaagctattatatgtataaa |
165 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
27794908 |
ttatattacacaaccagttcctaatttcctgaaattatgatctagctgtgtgtgtaattgcaacataatttttctaatatgaagctattatatgtataaa |
27795007 |
T |
|
| Q |
166 |
ataaaacgtatttatattatacaaaactattacaaatctctacctaagagttaagtatgctatcattttcttgtatacatactccatgtttgttgaa--n |
263 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
27795008 |
ataaaacgtatttatattatacaaaactattaaaaatctctacctaagagttaagtatgctatcattttcttgtatacatactccatggttgttgaaata |
27795107 |
T |
|
| Q |
264 |
nnnnnnnncttgaatttgttatttttagttgaatgaataattacaataattaagtatatgatcattaattttacctgatcttcctcggagattttcagct |
363 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27795108 |
ttttttttcttgaatttgttatttttagttgaatgaataatcacaataattaagtatatgatcattaattttacctgatcttcctcggagattttcagct |
27795207 |
T |
|
| Q |
364 |
atggcgttccaattatgaggtccatagctttccaccaactccct |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27795208 |
atggcgttccaattatgaggtccatagctttccaccaactccct |
27795251 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University