View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11827_high_23 (Length: 421)
Name: NF11827_high_23
Description: NF11827
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11827_high_23 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 396; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 18 - 421
Target Start/End: Complemental strand, 11400607 - 11400204
Alignment:
| Q |
18 |
tgtgggactgatattatcagataataactgataaacttagggatacaacttaaagcttttaagtaaaaataaaaactgcaagcttttgatgggaagaagg |
117 |
Q |
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| T |
11400607 |
tgtgggactgatattatcagataataactgataaacttagggatacaacttaaagctttaaagtaaaaataaaaactgcaagcttttgatgggaagaagg |
11400508 |
T |
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| Q |
118 |
aaagaagctgcaggcagctgtgcgcagtggtttgcatgcattcgagactccgacaagacgaggaagctgatcaatggcagaagatgcatcaatgatcaaa |
217 |
Q |
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| T |
11400507 |
aaagaagctgcaggcagctgtgcgcagtggtttgcatgcattcgagactccgacaagacgaggaagctgatcaatggcagaagatgcatcaatgatcaaa |
11400408 |
T |
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| Q |
218 |
caagaggaatccaccaaatattttaaaccgagaaaaagagtatgatgcaaggaagtaggagtttgaagtcttgttaccttcaaagaatgtttattataga |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11400407 |
caagaggaatccaccaaatattttaaaccgagaaaaagagtatgatgcaaggaagtaggagtttgaagtcttgttaccttcaaagaatgtttattataga |
11400308 |
T |
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| Q |
318 |
attacgttgcttcctcttgcgcctccttgcattcctcaaaattctctcggtttcttcctcttcttccttggtcaaatttccaaacaagtcttctccatgg |
417 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11400307 |
attacgttgcttcctcttgtgcctccttgcattcctcaaaattctctcggtttcttcctcttcttccttggtcaaatttccaaacaagtcttctccatgg |
11400208 |
T |
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| Q |
418 |
aaac |
421 |
Q |
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| T |
11400207 |
aaac |
11400204 |
T |
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