View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11827_high_24 (Length: 406)
Name: NF11827_high_24
Description: NF11827
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11827_high_24 |
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Alignment Details
Target: chr3 (Bit Score: 163; Significance: 6e-87; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 163; E-Value: 6e-87
Query Start/End: Original strand, 201 - 383
Target Start/End: Original strand, 47056803 - 47056985
Alignment:
| Q |
201 |
taatatctcatttattgttccctcaattttccatggccgtgcggagtttcatcatggcgtacgtgcattttgtcgctattgtttttgttatttttgttca |
300 |
Q |
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| T |
47056803 |
taatatctcatttattgttccctcaattttccatggccttacggagtttcatcatggcgtacgtgtattttgtcgccattgtttttgttatttttgttca |
47056902 |
T |
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| Q |
301 |
ctctattaaaacggagaaaaacgataacctacctttttgtcacgaccgttttcgtgtggtaatataaactcttatttaaaacc |
383 |
Q |
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| T |
47056903 |
ctctattaaaacggagaaaaacgataacctacctttttatcacgaccgttttcgtgtggtaatataaactcttatttaaaacc |
47056985 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 160; E-Value: 4e-85
Query Start/End: Original strand, 1 - 185
Target Start/End: Original strand, 47056574 - 47056762
Alignment:
| Q |
1 |
atggttgtacaaatatcatttctcaatgcttaatgttacgagaaagttcaagcaagaaatgcacgaacagatcaggtccctagaatttaaccaaggaacg |
100 |
Q |
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| T |
47056574 |
atggttgcacaaatatcatttctcaatgtttaatgttacgggaaagttcaagcaagaaatgcacgaacagatcaggtccctagaatttaaccaaggaacg |
47056673 |
T |
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| Q |
101 |
gccatgatttccatctttcacggaactaatattttccagtttatctaaagcc----aaatatatatagtcattcttgcttttcttgcac |
185 |
Q |
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| T |
47056674 |
gccatgatttccatctttcacggaactaatattttccagtttatctaaagccaaataaatatatatagtcattcttgcttttcttgcac |
47056762 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 28 - 117
Target Start/End: Complemental strand, 44196663 - 44196574
Alignment:
| Q |
28 |
gcttaatgttacgagaaagttcaagcaagaaatgcacgaacagatcaggtccctagaatttaaccaaggaacggccatgatttccatctt |
117 |
Q |
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| T |
44196663 |
gcttaatgttacaggaaagttcaagcaagaaatgcacgaatagatcaggttcttataatttaaccaaggaacgaccatgatttccgtctt |
44196574 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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