View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11827_high_27 (Length: 373)
Name: NF11827_high_27
Description: NF11827
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11827_high_27 |
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Alignment Details
Target: chr6 (Bit Score: 356; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 1 - 356
Target Start/End: Complemental strand, 27794566 - 27794211
Alignment:
| Q |
1 |
cagcatagtgaaagatattttcttgagaaacattatttaatccaacattataaggttatctgtctcatattccttgatttataagtttaatttgtaaata |
100 |
Q |
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| T |
27794566 |
cagcatagtgaaagatattttcttgagaaacattatttaatccaacattataaggttatctgtctcatattccttgatttataagtttaatttgtaaata |
27794467 |
T |
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| Q |
101 |
ttaattataacataagctcattttgtcatgaattttattagggaaaagttgtaggttgagatggttcaatcaattggacccaagaataaacagaaatcct |
200 |
Q |
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| T |
27794466 |
ttaattataacataagctcattttgtcatgaattttattagggaaaagttgtaggttgagatggttcaatcaattggacccaagaataaacagaaatcct |
27794367 |
T |
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| Q |
201 |
ttcacggaggaagaagaagagcgtcttataacttctcatcggattcatggtaatagatgggcggtaattgcaagacacttccccggacggactgataacg |
300 |
Q |
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| T |
27794366 |
ttcacggaggaagaagaagagcgtcttataacttctcatcggattcatggtaatagatgggcggtaattgcaagacacttccccggacggactgataacg |
27794267 |
T |
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| Q |
301 |
ctgtaaagaatcattggcatgtgatgatggcgaggattcgtcgagaaaggtataag |
356 |
Q |
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| T |
27794266 |
ctgtaaagaatcattggcatgtgatgatggcgaggattcgtcgagaaaggtataag |
27794211 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 140 - 331
Target Start/End: Complemental strand, 40752185 - 40751994
Alignment:
| Q |
140 |
agggaaaagttgtaggttgagatggttcaatcaattggacccaagaataaacagaaatcctttcacggaggaagaagaagagcgtcttataacttctcat |
239 |
Q |
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| T |
40752185 |
agggaaaagttgtaggttgagatggttcaatcagctagatccaagaattaacagaagacctttcacagaagaggaagaagagagactacttgcggctcat |
40752086 |
T |
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| Q |
240 |
cggattcatggtaatagatgggcggtaattgcaagacacttccccggacggactgataacgctgtaaagaatcattggcatgtgatgatggc |
331 |
Q |
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| T |
40752085 |
cggattcacggaaacaaatgggcactaatagcaagacttttccctggtagaactgataatgctgtgaagaatcattggcatgttataatggc |
40751994 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 147 - 195
Target Start/End: Complemental strand, 18245492 - 18245444
Alignment:
| Q |
147 |
agttgtaggttgagatggttcaatcaattggacccaagaataaacagaa |
195 |
Q |
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| T |
18245492 |
agttgtaggctgagatggttcaaccaactggatccaagaatcaacagaa |
18245444 |
T |
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