View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11827_high_29 (Length: 341)
Name: NF11827_high_29
Description: NF11827
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11827_high_29 |
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Alignment Details
Target: chr4 (Bit Score: 286; Significance: 1e-160; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 18 - 331
Target Start/End: Original strand, 41128613 - 41128926
Alignment:
| Q |
18 |
caatgagtttaacttctccaagattcaaacattacaagaattggtgaagaattgaactcaatttatacatatttagcatataacacacataaataacaca |
117 |
Q |
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| T |
41128613 |
caatgagtttaacttctccaagattcaaacattacaagaattggtgaagaattgaactcaag--atacatatttagcatataacacacataaataacaca |
41128710 |
T |
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| Q |
118 |
gtggtcaacatatatatcac--tttgtttcatatttcatatgtcatcccaaccttgagaagcctcttgcggggaattgctatagaatcttctccttgtct |
215 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41128711 |
gtggtcaacatatatatcacactttgtttcatatttcatatgtcatcccaaccttgagaagcctcttgcggggaattgctatagaatcttctccttgtct |
41128810 |
T |
|
| Q |
216 |
aaagtttttgcgcaagaagctataagcatagttgacaacaatcttattcaaaatggaagaatttgggtgagctactacctctgcttcacctatcatatat |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41128811 |
aaagtttttgcgcaagaagctataagcatagttgacaacaatcttattcaaaatggaagaatttgggtgagctactacctctgcttcacctatcatatat |
41128910 |
T |
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| Q |
316 |
accacaccattctctg |
331 |
Q |
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||||||||||| |||| |
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| T |
41128911 |
accacaccattttctg |
41128926 |
T |
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