View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11827_high_31 (Length: 332)

Name: NF11827_high_31
Description: NF11827
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11827_high_31
NF11827_high_31
[»] chr6 (13 HSPs)
chr6 (1-311)||(24939833-24940143)
chr6 (233-305)||(4107952-4108024)
chr6 (234-305)||(6969312-6969383)
chr6 (268-308)||(1928719-1928759)
chr6 (268-308)||(3092269-3092309)
chr6 (268-308)||(8610981-8611021)
chr6 (80-124)||(24896577-24896621)
chr6 (235-306)||(25529241-25529312)
chr6 (234-305)||(28573845-28573916)
chr6 (231-305)||(24443923-24443997)
chr6 (241-307)||(34316957-34317023)
chr6 (237-306)||(4897510-4897579)
chr6 (233-305)||(1218516-1218588)
[»] chr1 (15 HSPs)
chr1 (237-322)||(43116050-43116135)
chr1 (235-309)||(41918918-41918992)
chr1 (234-306)||(38894754-38894826)
chr1 (234-300)||(19322366-19322432)
chr1 (266-307)||(12712347-12712388)
chr1 (234-305)||(1367290-1367361)
chr1 (235-306)||(33075672-33075743)
chr1 (234-305)||(47134703-47134774)
chr1 (231-305)||(10698135-10698209)
chr1 (233-306)||(22198923-22198996)
chr1 (237-306)||(46626340-46626409)
chr1 (233-305)||(4890096-4890168)
chr1 (233-305)||(16300387-16300459)
chr1 (276-308)||(28570240-28570272)
chr1 (233-305)||(29188317-29188389)
[»] chr5 (9 HSPs)
chr5 (240-310)||(43352925-43352995)
chr5 (234-294)||(22693717-22693777)
chr5 (240-306)||(12422360-12422426)
chr5 (266-308)||(12706085-12706127)
chr5 (268-308)||(9813961-9814001)
chr5 (268-308)||(12767223-12767263)
chr5 (234-306)||(36886984-36887056)
chr5 (235-305)||(25698734-25698804)
chr5 (234-306)||(17643401-17643473)
[»] chr7 (14 HSPs)
chr7 (235-310)||(17814592-17814668)
chr7 (241-309)||(19052316-19052385)
chr7 (233-305)||(688061-688133)
chr7 (233-305)||(4848346-4848418)
chr7 (234-305)||(49146139-49146211)
chr7 (233-310)||(46197414-46197492)
chr7 (233-305)||(21600987-21601059)
chr7 (268-308)||(34126511-34126551)
chr7 (235-306)||(29467751-29467822)
chr7 (235-305)||(11840464-11840534)
chr7 (235-305)||(39651165-39651235)
chr7 (266-295)||(9229896-9229925)
chr7 (266-307)||(21893279-21893320)
chr7 (226-306)||(44804511-44804591)
[»] chr4 (13 HSPs)
chr4 (234-310)||(33506171-33506247)
chr4 (233-305)||(12682772-12682844)
chr4 (244-310)||(29348373-29348439)
chr4 (233-305)||(2116087-2116159)
chr4 (232-306)||(3757723-3757797)
chr4 (237-306)||(13171627-13171696)
chr4 (233-306)||(51347486-51347559)
chr4 (258-310)||(35833425-35833477)
chr4 (234-305)||(39716734-39716805)
chr4 (234-300)||(24948308-24948374)
chr4 (240-305)||(46104184-46104249)
chr4 (233-306)||(50119973-50120046)
chr4 (233-305)||(3821215-3821287)
[»] chr3 (13 HSPs)
chr3 (235-310)||(5237939-5238015)
chr3 (234-306)||(11602180-11602252)
chr3 (234-305)||(8393562-8393633)
chr3 (234-305)||(26777867-26777938)
chr3 (237-306)||(28981833-28981902)
chr3 (240-305)||(53800504-53800569)
chr3 (233-305)||(4139364-4139436)
chr3 (268-308)||(26039966-26040006)
chr3 (258-305)||(22519212-22519259)
chr3 (266-308)||(12177004-12177046)
chr3 (232-306)||(29530577-29530651)
chr3 (266-307)||(2847349-2847390)
chr3 (268-308)||(15321257-15321297)
[»] scaffold0051 (2 HSPs)
scaffold0051 (234-305)||(62061-62132)
scaffold0051 (266-308)||(53387-53429)
[»] scaffold0045 (1 HSPs)
scaffold0045 (237-294)||(18896-18953)
[»] chr2 (7 HSPs)
chr2 (233-306)||(32677199-32677272)
chr2 (234-305)||(28607220-28607291)
chr2 (234-300)||(10050211-10050277)
chr2 (236-305)||(9545792-9545861)
chr2 (234-306)||(10876587-10876657)
chr2 (237-306)||(17836969-17837038)
chr2 (237-305)||(2952759-2952827)
[»] chr8 (8 HSPs)
chr8 (233-305)||(4466437-4466509)
chr8 (235-305)||(25620731-25620801)
chr8 (240-305)||(7389203-7389268)
chr8 (234-306)||(36776403-36776475)
chr8 (251-306)||(40587708-40587763)
chr8 (244-306)||(41972965-41973027)
chr8 (240-305)||(25616515-25616580)
chr8 (234-306)||(24053913-24053985)
[»] scaffold0009 (1 HSPs)
scaffold0009 (234-305)||(225434-225505)
[»] scaffold0759 (1 HSPs)
scaffold0759 (232-305)||(5908-5981)
[»] scaffold0057 (1 HSPs)
scaffold0057 (234-305)||(20596-20667)


Alignment Details
Target: chr6 (Bit Score: 263; Significance: 1e-146; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 1 - 311
Target Start/End: Complemental strand, 24940143 - 24939833
Alignment:
Q  1 tgtggtgggcggggtttggacttggaccttgcatatatttaatgcattgtcccttgtatatattaagaattttatttggtaagctagatctgtgactagg 100  Q
    |||||| ||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  24940143 tgtggtcggccgagtttggacttggaccttgcatatatttaatgcattgtcccttgtatatattaagaattttatttggtaagctagatctctgactagg 24940044  T
Q  101 ttcacacactttaagtatttaaaagtaaaaaattcagagttcgaacttcggccacttcacataatgtctctagtagcaaccaattcagcttcacttactg 200  Q
    |||||||||||||||||||||||||| ||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||| ||||||||||||||    
T  24940043 ttcacacactttaagtatttaaaagttaaaaattcagagttcgaacctcggtcacttcacataatgtctctagtagcaaccaattgagcttcacttactg 24939944  T
Q  201 gacaagatttaaataaaattatacgaaagataaatctatatactaatataaaaatacatgtccattgaattttcaattttgcccctaggaggggcaattt 300  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||     
T  24939943 gacaagatttaaataaaattatacgaaagataaatgtatatactaatataaaaatacatgtccattgaattttcaattttggccctaggaggggcaattc 24939844  T
Q  301 agtaattcacc 311  Q
    | |||||||||    
T  24939843 actaattcacc 24939833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 233 - 305
Target Start/End: Original strand, 4107952 - 4108024
Alignment:
Q  233 aatctatatactaatataaaaatacatgtccattgaattttcaattttgcccctaggaggggcaatttagtaa 305  Q
    ||||||||||||||||||||| |  ||||||||||| ||| | ||||| |||||| |||||||||||| ||||    
T  4107952 aatctatatactaatataaaagttaatgtccattgattttaccatttttcccctatgaggggcaatttggtaa 4108024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 234 - 305
Target Start/End: Complemental strand, 6969383 - 6969312
Alignment:
Q  234 atctatatactaatataaaaatacatgtccattgaattttcaattttgcccctaggaggggcaatttagtaa 305  Q
    |||||||||||||||||||| |  |||||| |||||||| | ||||||||||||  ||||||||||| ||||    
T  6969383 atctatatactaatataaaagttaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaa 6969312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 268 - 308
Target Start/End: Original strand, 1928719 - 1928759
Alignment:
Q  268 aattttcaattttgcccctaggaggggcaatttagtaattc 308  Q
    |||||||||||||||||||| |||||||||||| |||||||    
T  1928719 aattttcaattttgcccctaagaggggcaatttggtaattc 1928759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 268 - 308
Target Start/End: Complemental strand, 3092309 - 3092269
Alignment:
Q  268 aattttcaattttgcccctaggaggggcaatttagtaattc 308  Q
    ||||||||||||||||| ||||||||||||||| |||||||    
T  3092309 aattttcaattttgcccataggaggggcaatttggtaattc 3092269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 268 - 308
Target Start/End: Original strand, 8610981 - 8611021
Alignment:
Q  268 aattttcaattttgcccctaggaggggcaatttagtaattc 308  Q
    ||||| ||||||||||||||| |||||||||||||||||||    
T  8610981 aatttacaattttgcccctagaaggggcaatttagtaattc 8611021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 80 - 124
Target Start/End: Complemental strand, 24896621 - 24896577
Alignment:
Q  80 taagctagatctgtgactaggttcacacactttaagtatttaaaa 124  Q
    |||| |||||| ||||||| |||||||||||||||||||||||||    
T  24896621 taaggtagatcagtgactaagttcacacactttaagtatttaaaa 24896577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 235 - 306
Target Start/End: Original strand, 25529241 - 25529312
Alignment:
Q  235 tctatatactaatataaaaatacatgtccattgaattttcaattttgcccctaggaggggcaatttagtaat 306  Q
    ||||||||||||||||||||| ||||||| |||  ||| | ||||||| ||||  ||||||||||| |||||    
T  25529241 tctatatactaatataaaaatccatgtccgttgcttttacgattttgctcctataaggggcaatttggtaat 25529312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 234 - 305
Target Start/End: Complemental strand, 28573916 - 28573845
Alignment:
Q  234 atctatatactaatataaaaatacatgtccattgaattttcaattttgcccctaggaggggcaatttagtaa 305  Q
    ||||||||||| |||||||| |  || ||| |||| ||| | ||||||||||||||||||||||||| ||||    
T  28573916 atctatatactgatataaaagttaatatcctttgattttaccattttgcccctaggaggggcaatttggtaa 28573845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 231 - 305
Target Start/End: Original strand, 24443923 - 24443997
Alignment:
Q  231 taaatctatatactaatataaaaatacatgtccattgaattttcaattttgcccctaggaggggcaatttagtaa 305  Q
    |||||||||||||| |||| |||| | || ||| |||||||| | ||||||||||||  ||||||||||| ||||    
T  24443923 taaatctatatacttatattaaaagaaatatcctttgaatttaccattttgcccctattaggggcaatttggtaa 24443997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 241 - 307
Target Start/End: Original strand, 34316957 - 34317023
Alignment:
Q  241 tactaatataaaaatacatgtccattgaattttcaattttgcccctaggaggggcaatttagtaatt 307  Q
    ||||||||||||||   ||||||||||| ||| |  ||||||||||| |||||||||||| ||||||    
T  34316957 tactaatataaaaagtgatgtccattgattttacctttttgcccctaagaggggcaatttggtaatt 34317023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 237 - 306
Target Start/End: Complemental strand, 4897579 - 4897510
Alignment:
Q  237 tatatactaatataaaaatacatgtccattgaattttcaattttgcccctaggaggggcaatttagtaat 306  Q
    |||||||| |||| |||| | |||||| |||||||| | ||||||||||||  ||||||||||| |||||    
T  4897579 tatatacttatattaaaagaaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaat 4897510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 233 - 305
Target Start/End: Original strand, 1218516 - 1218588
Alignment:
Q  233 aatctatatactaatataaaaatacatgtccattgaattttcaattttgcccctaggaggggcaatttagtaa 305  Q
    |||||||||||| |||| |||| | |||||| |||||||| | ||||||||||||  | ||||||||| ||||    
T  1218516 aatctatatacttatattaaaagaaatgtcctttgaatttaccattttgcccctattaagggcaatttggtaa 1218588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 70; Significance: 2e-31; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 237 - 322
Target Start/End: Original strand, 43116050 - 43116135
Alignment:
Q  237 tatatactaatataaaaatacatgtccattgaattttcaattttgcccctaggaggggcaatttagtaattcaccgatggcctatg 322  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||  |||||||||    
T  43116050 tatatactaatataaaaatacatgtccattgaatttccaattttgcccctaggaggggcaatttggtaattcaccattggcctatg 43116135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 235 - 309
Target Start/End: Complemental strand, 41918992 - 41918918
Alignment:
Q  235 tctatatactaatataaaaatacatgtccattgaattttcaattttgcccctaggaggggcaatttagtaattca 309  Q
    |||||||||||||||||||||| ||||||||||||||| |||||||||||||||||| |||||||| || |||||    
T  41918992 tctatatactaatataaaaatatatgtccattgaatttccaattttgcccctaggagtggcaatttggtgattca 41918918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 234 - 306
Target Start/End: Original strand, 38894754 - 38894826
Alignment:
Q  234 atctatatactaatataaaaatacatgtccattgaattttcaattttgcccctaggaggggcaatttagtaat 306  Q
    |||||||||||||||  ||| || ||||||||||||||| | ||||||||||||  ||||||||||| |||||    
T  38894754 atctatatactaataagaaagtaaatgtccattgaatttaccattttgcccctataaggggcaatttggtaat 38894826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 234 - 300
Target Start/End: Complemental strand, 19322432 - 19322366
Alignment:
Q  234 atctatatactaatataaaaatacatgtccattgaattttcaattttgcccctaggaggggcaattt 300  Q
    |||||||||||||||  |||||| |||||| |||||||| | ||||||||||||  |||||||||||    
T  19322432 atctatatactaataagaaaataaatgtcccttgaatttaccattttgcccctataaggggcaattt 19322366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 266 - 307
Target Start/End: Original strand, 12712347 - 12712388
Alignment:
Q  266 tgaattttcaattttgcccctaggaggggcaatttagtaatt 307  Q
    ||||||| ||||||||||||||||||||||||||| ||||||    
T  12712347 tgaatttccaattttgcccctaggaggggcaatttggtaatt 12712388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 234 - 305
Target Start/End: Original strand, 1367290 - 1367361
Alignment:
Q  234 atctatatactaatataaaaatacatgtccattgaattttcaattttgcccctaggaggggcaatttagtaa 305  Q
    ||||||||||| |||| |||| | |||||| |||||||| | ||||||||||||  ||||||||||| ||||    
T  1367290 atctatatacttatattaaaagaaatgtcctttgaatttaccattttgcccctattaggggcaatttggtaa 1367361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 235 - 306
Target Start/End: Complemental strand, 33075743 - 33075672
Alignment:
Q  235 tctatatactaatataaaaatacatgtccattgaattttcaattttgcccctaggaggggcaatttagtaat 306  Q
    |||||||||| |||| |||| | |||||| |||||||| | ||||||||||||  ||||||||||| |||||    
T  33075743 tctatatacttatattaaaagaaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaat 33075672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 234 - 305
Target Start/End: Original strand, 47134703 - 47134774
Alignment:
Q  234 atctatatactaatataaaaatacatgtccattgaattttcaattttgcccctaggaggggcaatttagtaa 305  Q
    ||||||||||| ||||||||    ||||||||||||||| | ||||||||||||  ||||||||||| ||||    
T  47134703 atctatatacttatataaaaggtaatgtccattgaatttaccattttgcccctataaggggcaatttggtaa 47134774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 231 - 305
Target Start/End: Complemental strand, 10698209 - 10698135
Alignment:
Q  231 taaatctatatactaatataaaaatacatgtccattgaattttcaattttgcccctaggaggggcaatttagtaa 305  Q
    ||||||||||| |||| ||||||| | ||||||| | ||||| | ||||||||||||| ||||||| ||| ||||    
T  10698209 taaatctatatgctaacataaaaagaaatgtccaataaatttaccattttgcccctagaaggggcattttggtaa 10698135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 233 - 306
Target Start/End: Complemental strand, 22198996 - 22198923
Alignment:
Q  233 aatctatatactaatataaaaatacatgtccattgaattttcaattttgcccctaggaggggcaatttagtaat 306  Q
    |||||||||||| |||| |||| | |||||| ||||||||   ||||||||||||  ||||||||||| |||||    
T  22198996 aatctatatacttatattaaaagaaatgtcccttgaatttatcattttgcccctataaggggcaatttggtaat 22198923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 237 - 306
Target Start/End: Complemental strand, 46626409 - 46626340
Alignment:
Q  237 tatatactaatataaaaatacatgtccattgaattttcaattttgcccctaggaggggcaatttagtaat 306  Q
    ||||||||||||  |||| | |||||| |||||||| | ||||||||||||  ||||||||||| |||||    
T  46626409 tatatactaataagaaaagaaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaat 46626340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 233 - 305
Target Start/End: Original strand, 4890096 - 4890168
Alignment:
Q  233 aatctatatactaatataaaaatacatgtccattgaattttcaattttgcccctaggaggggcaatttagtaa 305  Q
    |||||||||||| |||| |||| | |||||| |||||||| | |||||||| |||  ||||||||||| ||||    
T  4890096 aatctatatacttatattaaaagaaatgtcctttgaatttaccattttgcctctattaggggcaatttggtaa 4890168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 233 - 305
Target Start/End: Original strand, 16300387 - 16300459
Alignment:
Q  233 aatctatatactaatataaaaatacatgtccattgaattttcaattttgcccctaggaggggcaatttagtaa 305  Q
    |||||||||||| |||| |||||  |||||| |||||||| | ||||||| ||||  ||||||||||| ||||    
T  16300387 aatctatatacttatattaaaattaatgtcccttgaatttaccattttgctcctataaggggcaatttggtaa 16300459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 276 - 308
Target Start/End: Complemental strand, 28570272 - 28570240
Alignment:
Q  276 attttgcccctaggaggggcaatttagtaattc 308  Q
    ||||||||||||||||||||||||| |||||||    
T  28570272 attttgcccctaggaggggcaatttggtaattc 28570240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 233 - 305
Target Start/End: Complemental strand, 29188389 - 29188317
Alignment:
Q  233 aatctatatactaatataaaaatacatgtccattgaattttcaattttgcccctaggaggggcaatttagtaa 305  Q
    |||||||||||| |||| |||| | |||||| |||||||| | ||||||||||||  | ||||||||| ||||    
T  29188389 aatctatatacttatattaaaagaaatgtcctttgaatttaccattttgcccctattaagggcaatttggtaa 29188317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 51; Significance: 3e-20; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 240 - 310
Target Start/End: Original strand, 43352925 - 43352995
Alignment:
Q  240 atactaatataaaaatacatgtccattgaattttcaattttgcccctaggaggggcaatttagtaattcac 310  Q
    ||||||||||||||||||||||||||||||||| ||||||||||  ||||||||||||||| |||| ||||    
T  43352925 atactaatataaaaatacatgtccattgaatttccaattttgcctataggaggggcaatttggtaaatcac 43352995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 234 - 294
Target Start/End: Original strand, 22693717 - 22693777
Alignment:
Q  234 atctatatactaatataaaaatacatgtccattgaattttcaattttgcccctaggagggg 294  Q
    ||||||||||||||||||||||| ||||| ||||| ||| |||||||||||  ||||||||    
T  22693717 atctatatactaatataaaaatagatgtctattgattttccaattttgccctcaggagggg 22693777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 240 - 306
Target Start/End: Complemental strand, 12422426 - 12422360
Alignment:
Q  240 atactaatataaaaatacatgtccattgaattttcaattttgcccctaggaggggcaatttagtaat 306  Q
    |||||||||||||||| ||||||| |||| ||| | ||||||||||||  ||||||||||| |||||    
T  12422426 atactaatataaaaattcatgtcctttgattttaccattttgcccctataaggggcaatttggtaat 12422360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 266 - 308
Target Start/End: Complemental strand, 12706127 - 12706085
Alignment:
Q  266 tgaattttcaattttgcccctaggaggggcaatttagtaattc 308  Q
    ||||||| ||||||||||||||| |||||||||||||||||||    
T  12706127 tgaatttacaattttgcccctagaaggggcaatttagtaattc 12706085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 268 - 308
Target Start/End: Complemental strand, 9814001 - 9813961
Alignment:
Q  268 aattttcaattttgcccctaggaggggcaatttagtaattc 308  Q
    ||||| ||||||||||||||| |||||||||||||||||||    
T  9814001 aatttacaattttgcccctagaaggggcaatttagtaattc 9813961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 268 - 308
Target Start/End: Complemental strand, 12767263 - 12767223
Alignment:
Q  268 aattttcaattttgcccctaggaggggcaatttagtaattc 308  Q
    ||||| ||||||||||||||| |||||||||||||||||||    
T  12767263 aatttacaattttgcccctagaaggggcaatttagtaattc 12767223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 234 - 306
Target Start/End: Complemental strand, 36887056 - 36886984
Alignment:
Q  234 atctatatactaatataaaaatacatgtccattgaattttcaattttgcccctaggaggggcaatttagtaat 306  Q
    |||||||||||||||  |||| | |||||| |||||||| | ||||||||||||  ||||||||||| |||||    
T  36887056 atctatatactaataagaaaagaaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaat 36886984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 235 - 305
Target Start/End: Complemental strand, 25698804 - 25698734
Alignment:
Q  235 tctatatactaatataaaaatacatgtccattgaattttcaattttgcccctaggaggggcaatttagtaa 305  Q
    |||||||||| |||| |||| | |||||| |||||||| | ||||||||||||  ||||||||||| ||||    
T  25698804 tctatatacttatattaaaagaaatgtcctttgaatttaccattttgcccctattaggggcaatttggtaa 25698734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 234 - 306
Target Start/End: Complemental strand, 17643473 - 17643401
Alignment:
Q  234 atctatatactaatataaaaatacatgtccattgaattttcaattttgcccctaggaggggcaatttagtaat 306  Q
    |||||||||||||||  |||||| |||||| ||||||||   ||||||||| ||  ||||||||||| |||||    
T  17643473 atctatatactaataagaaaataaatgtcccttgaatttatcattttgcccttataaggggcaatttggtaat 17643401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 45; Significance: 1e-16; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 235 - 310
Target Start/End: Original strand, 17814592 - 17814668
Alignment:
Q  235 tctatatactaatataaaaatacatgtccattgaattttcaattttgcccc-taggaggggcaatttagtaattcac 310  Q
    ||||||||||| |||||||| | ||||||||||||||| |||||||||||| ||||| ||||||||| |||||||||    
T  17814592 tctatatactactataaaaagagatgtccattgaatttccaattttgccccataggaagggcaatttggtaattcac 17814668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 241 - 309
Target Start/End: Complemental strand, 19052385 - 19052316
Alignment:
Q  241 tactaatataaaaatacatgtccattgaattttcaattttgcccc-taggaggggcaatttagtaattca 309  Q
    ||||| |||||||| | ||||||||||||||| |||||||||||| || |||||||||||| ||||||||    
T  19052385 tactactataaaaagagatgtccattgaatttccaattttgccccatatgaggggcaatttggtaattca 19052316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 233 - 305
Target Start/End: Original strand, 688061 - 688133
Alignment:
Q  233 aatctatatactaatataaaaatacatgtccattgaattttcaattttgcccctaggaggggcaatttagtaa 305  Q
    ||||||||||||||||||||| |  |||||| |||||||| | ||||||||||||  ||||||||||| ||||    
T  688061 aatctatatactaatataaaagttaatgtcctttgaatttaccattttgcccctataaggggcaatttggtaa 688133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 233 - 305
Target Start/End: Original strand, 4848346 - 4848418
Alignment:
Q  233 aatctatatactaatataaaaatacatgtccattgaattttcaattttgcccctaggaggggcaatttagtaa 305  Q
    ||||||||||||||||||||| |  ||||||||||| ||| | |||||||||||| |||||| ||||| ||||    
T  4848346 aatctatatactaatataaaagttaatgtccattgattttaccattttgcccctatgaggggtaatttggtaa 4848418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 234 - 305
Target Start/End: Complemental strand, 49146211 - 49146139
Alignment:
Q  234 atctatatactaatataaaaa-tacatgtccattgaattttcaattttgcccctaggaggggcaatttagtaa 305  Q
    ||||||||||||||||||||| |  ||||||||||| ||| | |||||||||||| |||||||||||| ||||    
T  49146211 atctatatactaatataaaaagttaatgtccattgattttaccattttgcccctatgaggggcaatttggtaa 49146139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 233 - 310
Target Start/End: Original strand, 46197414 - 46197492
Alignment:
Q  233 aatctatatactaa-tataaaaatacatgtccattgaattttcaattttgcccctaggaggggcaatttagtaattcac 310  Q
    |||||||||||||| ||||||| |  ||||||||||| ||| | ||||||||| |||||| |||||||| |||||||||    
T  46197414 aatctatatactaaatataaaagttaatgtccattgattttaccattttgcccttaggagaggcaatttggtaattcac 46197492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 233 - 305
Target Start/End: Complemental strand, 21601059 - 21600987
Alignment:
Q  233 aatctatatactaatataaaaatacatgtccattgaattttcaattttgcccctaggaggggcaatttagtaa 305  Q
    ||||||||||||  ||| |||| | ||||||||||||||| | ||||||||||||  ||||||||||| ||||    
T  21601059 aatctatatacttctattaaaagaaatgtccattgaatttaccattttgcccctataaggggcaatttggtaa 21600987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 268 - 308
Target Start/End: Original strand, 34126511 - 34126551
Alignment:
Q  268 aattttcaattttgcccctaggaggggcaatttagtaattc 308  Q
    ||||| ||||||||||||||| |||||||||||||||||||    
T  34126511 aatttacaattttgcccctagaaggggcaatttagtaattc 34126551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 235 - 306
Target Start/End: Original strand, 29467751 - 29467822
Alignment:
Q  235 tctatatactaatataaaaatacatgtccattgaattttcaattttgcccctaggaggggcaatttagtaat 306  Q
    |||||||||| |||| |||| | |||||| |||||||| | ||||||||||||  ||||||||||| |||||    
T  29467751 tctatatacttatattaaaagaaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaat 29467822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 235 - 305
Target Start/End: Complemental strand, 11840534 - 11840464
Alignment:
Q  235 tctatatactaatataaaaatacatgtccattgaattttcaattttgcccctaggaggggcaatttagtaa 305  Q
    ||||||||||  ||| |||| | ||||||||||||||| | ||||||||||||  ||||||||||| ||||    
T  11840534 tctatatacttctattaaaagaaatgtccattgaatttaccattttgcccctataaggggcaatttggtaa 11840464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 235 - 305
Target Start/End: Complemental strand, 39651235 - 39651165
Alignment:
Q  235 tctatatactaatataaaaatacatgtccattgaattttcaattttgcccctaggaggggcaatttagtaa 305  Q
    |||||||||| |||| |||| | |||||| |||||||| | ||||||||||||  ||||||||||| ||||    
T  39651235 tctatatacttatattaaaagaaatgtcctttgaatttaccattttgcccctattaggggcaatttggtaa 39651165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 266 - 295
Target Start/End: Complemental strand, 9229925 - 9229896
Alignment:
Q  266 tgaattttcaattttgcccctaggaggggc 295  Q
    ||||||||||||||||||||||||||||||    
T  9229925 tgaattttcaattttgcccctaggaggggc 9229896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 266 - 307
Target Start/End: Original strand, 21893279 - 21893320
Alignment:
Q  266 tgaattttcaattttgcccctaggaggggcaatttagtaatt 307  Q
    ||||||| || |||||||||||||||||||||||| ||||||    
T  21893279 tgaatttccatttttgcccctaggaggggcaatttggtaatt 21893320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 226 - 306
Target Start/End: Original strand, 44804511 - 44804591
Alignment:
Q  226 aaagataaatctatatactaatataaaaatacatgtccattgaattttcaattttgcccctaggaggggcaatttagtaat 306  Q
    |||||| | ||||||||||||||  |||| | |||||| |||||||| | |||||| |||||  ||||||||||| |||||    
T  44804511 aaagattagtctatatactaataagaaaagaaatgtcccttgaatttaccattttgtccctataaggggcaatttggtaat 44804591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 45; Significance: 1e-16; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 234 - 310
Target Start/End: Complemental strand, 33506247 - 33506171
Alignment:
Q  234 atctatatactaatataaaaatacatgtccattgaattttcaattttgcccctaggaggggcaatttagtaattcac 310  Q
    ||||||| |||||||||||||||||||||||||||||||  ||||||| || ||||||||| |||||  ||||||||    
T  33506247 atctatacactaatataaaaatacatgtccattgaatttctaattttgtccttaggaggggtaatttgataattcac 33506171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 233 - 305
Target Start/End: Complemental strand, 12682844 - 12682772
Alignment:
Q  233 aatctatatactaatataaaaatacatgtccattgaattttcaattttgcccctaggaggggcaatttagtaa 305  Q
    ||||||||||||||||||||| |  ||||||||||| ||| | |||||||||||| |||||||||||| ||||    
T  12682844 aatctatatactaatataaaagttaatgtccattgattttaccattttgcccctatgaggggcaatttggtaa 12682772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 244 - 310
Target Start/End: Complemental strand, 29348439 - 29348373
Alignment:
Q  244 taatataaaaatacatgtccattgaattttcaattttgcccctaggaggggcaatttagtaattcac 310  Q
    |||||||||||| |||||||||||||||| |||||||||   |||||||||||||||  ||||||||    
T  29348439 taatataaaaatgcatgtccattgaatttccaattttgcatttaggaggggcaatttgataattcac 29348373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 233 - 305
Target Start/End: Original strand, 2116087 - 2116159
Alignment:
Q  233 aatctatatactaatataaaaatacatgtccattgaattttcaattttgcccctaggaggggcaatttagtaa 305  Q
    ||||||||||||||||||||| |  ||||||||||| ||| | |||||| || ||||||||||||||| ||||    
T  2116087 aatctatatactaatataaaagttaatgtccattgattttaccattttgtccttaggaggggcaatttggtaa 2116159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 232 - 306
Target Start/End: Original strand, 3757723 - 3757797
Alignment:
Q  232 aaatctatatactaatataaaaatacatgtccattgaattttcaattttgcccctaggaggggcaatttagtaat 306  Q
    |||||||||||||||||  |||| | |||| |||||||||| | ||||||||||||  ||||||||||| |||||    
T  3757723 aaatctatatactaataagaaaagaaatgttcattgaatttaccattttgcccctataaggggcaatttggtaat 3757797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 237 - 306
Target Start/End: Original strand, 13171627 - 13171696
Alignment:
Q  237 tatatactaatataaaaatacatgtccattgaattttcaattttgcccctaggaggggcaatttagtaat 306  Q
    ||||||||||||  |||||| |||||| |||||||| | ||||||||||||  ||||||||||| |||||    
T  13171627 tatatactaataagaaaataaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaat 13171696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 233 - 306
Target Start/End: Original strand, 51347486 - 51347559
Alignment:
Q  233 aatctatatactaatataaaaatacatgtccattgaattttcaattttgcccctaggaggggcaatttagtaat 306  Q
    ||||||||||||||||  |||| | |||||| |||||||| | ||||||||||||  ||||||||||| |||||    
T  51347486 aatctatatactaataagaaaagaaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaat 51347559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 258 - 310
Target Start/End: Complemental strand, 35833477 - 35833425
Alignment:
Q  258 atgtccattgaattttcaattttgcccctaggaggggcaatttagtaattcac 310  Q
    ||||||||||| ||| | |||||||||||| |||||||||||| |||||||||    
T  35833477 atgtccattgattttaccattttgcccctatgaggggcaatttggtaattcac 35833425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 234 - 305
Target Start/End: Complemental strand, 39716805 - 39716734
Alignment:
Q  234 atctatatactaatataaaaatacatgtccattgaattttcaattttgcccctaggaggggcaatttagtaa 305  Q
    ||||||||||| |||| |||| | |||||| |||||||| | ||||||||||||  ||||||||||| ||||    
T  39716805 atctatatacttatattaaaagaaatgtcctttgaatttaccattttgcccctattaggggcaatttggtaa 39716734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 234 - 300
Target Start/End: Complemental strand, 24948374 - 24948308
Alignment:
Q  234 atctatatactaatataaaaatacatgtccattgaattttcaattttgcccctaggaggggcaattt 300  Q
    ||||||||||| ||||||||| | |||||| |||||||| | ||||||| ||||  |||||||||||    
T  24948374 atctatatacttatataaaaagaaatgtcctttgaatttaccattttgctcctataaggggcaattt 24948308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 240 - 305
Target Start/End: Original strand, 46104184 - 46104249
Alignment:
Q  240 atactaatataaaaatacatgtccattgaattttcaattttgcccctaggaggggcaatttagtaa 305  Q
    |||||||||||||| |  ||||||||||| ||| | |||||||||| | |||||||||||| ||||    
T  46104184 atactaatataaaagttaatgtccattgattttaccattttgccccaatgaggggcaatttggtaa 46104249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 233 - 306
Target Start/End: Complemental strand, 50120046 - 50119973
Alignment:
Q  233 aatctatatactaatataaaaatacatgtccattgaattttcaattttgcccctaggaggggcaatttagtaat 306  Q
    ||||||||||||||||  ||||   |||||| |||||||| | ||||||||||||  ||||||||||| |||||    
T  50120046 aatctatatactaataagaaaaggaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaat 50119973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 233 - 305
Target Start/End: Complemental strand, 3821287 - 3821215
Alignment:
Q  233 aatctatatactaatataaaaatacatgtccattgaattttcaattttgcccctaggaggggcaatttagtaa 305  Q
    |||||||||||| |||| ||||   |||||| |||||||| | ||||||||||||  ||||||||||| ||||    
T  3821287 aatctatatacttatattaaaagtaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaa 3821215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 235 - 310
Target Start/End: Original strand, 5237939 - 5238015
Alignment:
Q  235 tctatatactaatataaaaatacatgtccattgaattttcaattttgcccc-taggaggggcaatttagtaattcac 310  Q
    ||||||||||| |||||||| | ||||||||||||||| |||||||||||| || |||||| ||||| |||||||||    
T  5237939 tctatatactactataaaaagagatgtccattgaatttccaattttgccccatatgaggggtaatttggtaattcac 5238015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 234 - 306
Target Start/End: Complemental strand, 11602252 - 11602180
Alignment:
Q  234 atctatatactaatataaaaatacatgtccattgaattttcaattttgcccctaggaggggcaatttagtaat 306  Q
    |||||||||||||||||||||| ||||||| |||| ||| | ||||||||||||  |||||||||| ||||||    
T  11602252 atctatatactaatataaaaatccatgtccgttgattttaccattttgcccctataaggggcaattcagtaat 11602180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 234 - 305
Target Start/End: Original strand, 8393562 - 8393633
Alignment:
Q  234 atctatatactaatataaaaatacatgtccattgaattttcaattttgcccctaggaggggcaatttagtaa 305  Q
    |||||||||||||||||||| |  |||||| |||||||| | ||||||||||||  ||||||||||| ||||    
T  8393562 atctatatactaatataaaagttaatgtcctttgaatttaccattttgcccctataaggggcaatttggtaa 8393633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 234 - 305
Target Start/End: Complemental strand, 26777938 - 26777867
Alignment:
Q  234 atctatatactaatataaaaatacatgtccattgaattttcaattttgcccctaggaggggcaatttagtaa 305  Q
    |||||||||||||||||||| |  | ||||||||| ||| | |||||||||||| |||||||||||| ||||    
T  26777938 atctatatactaatataaaagttaacgtccattgattttaccattttgcccctatgaggggcaatttggtaa 26777867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 237 - 306
Target Start/End: Complemental strand, 28981902 - 28981833
Alignment:
Q  237 tatatactaatataaaaatacatgtccattgaattttcaattttgcccctaggaggggcaatttagtaat 306  Q
    ||||||||||||  ||||| ||||||| |||||||| | ||||||||||||  ||||||||||| |||||    
T  28981902 tatatactaataagaaaatccatgtcccttgaatttaccattttgcccctataaggggcaatttggtaat 28981833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 240 - 305
Target Start/End: Original strand, 53800504 - 53800569
Alignment:
Q  240 atactaatataaaaatacatgtccattgaattttcaattttgcccctaggaggggcaatttagtaa 305  Q
    |||||||||||||| |  ||||||||||| ||| | ||||||||| ||||||||||||||| ||||    
T  53800504 atactaatataaaagttaatgtccattgattttaccattttgcccttaggaggggcaatttggtaa 53800569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 233 - 305
Target Start/End: Complemental strand, 4139436 - 4139364
Alignment:
Q  233 aatctatatactaatataaaaatacatgtccattgaattttcaattttgcccctaggaggggcaatttagtaa 305  Q
    ||||||||||||||||||||| |  ||||||||||| ||| | |||||| |||||  ||||||||||| ||||    
T  4139436 aatctatatactaatataaaagttaatgtccattgattttaccattttgtccctattaggggcaatttggtaa 4139364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 268 - 308
Target Start/End: Complemental strand, 26040006 - 26039966
Alignment:
Q  268 aattttcaattttgcccctaggaggggcaatttagtaattc 308  Q
    ||||| ||||||||||||||| |||||||||||||||||||    
T  26040006 aatttacaattttgcccctagaaggggcaatttagtaattc 26039966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 258 - 305
Target Start/End: Original strand, 22519212 - 22519259
Alignment:
Q  258 atgtccattgaattttcaattttgcccctaggaggggcaatttagtaa 305  Q
    ||||||||||||||| | ||||||||||||  ||||||||||||||||    
T  22519212 atgtccattgaatttaccattttgcccctataaggggcaatttagtaa 22519259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 266 - 308
Target Start/End: Complemental strand, 12177046 - 12177004
Alignment:
Q  266 tgaattttcaattttgcccctaggaggggcaatttagtaattc 308  Q
    ||||||| ||||||||| ||||||||||||||||| |||||||    
T  12177046 tgaatttccaattttgctcctaggaggggcaatttggtaattc 12177004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 232 - 306
Target Start/End: Complemental strand, 29530651 - 29530577
Alignment:
Q  232 aaatctatatactaatataaaaatacatgtccattgaattttcaattttgcccctaggaggggcaatttagtaat 306  Q
    |||||||||||||||||  |||| | |||||| |||||||| | |||||| |||||  ||||||||||| |||||    
T  29530651 aaatctatatactaataagaaaagaaatgtcccttgaatttaccattttgtccctataaggggcaatttggtaat 29530577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 266 - 307
Target Start/End: Complemental strand, 2847390 - 2847349
Alignment:
Q  266 tgaattttcaattttgcccctaggaggggcaatttagtaatt 307  Q
    ||||||||| |||||||||||| |||||||||||| ||||||    
T  2847390 tgaattttccattttgcccctaagaggggcaatttggtaatt 2847349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 268 - 308
Target Start/End: Complemental strand, 15321297 - 15321257
Alignment:
Q  268 aattttcaattttgcccctaggaggggcaatttagtaattc 308  Q
    ||||| ||||||||||||||  |||||||||||||||||||    
T  15321297 aatttacaattttgcccctataaggggcaatttagtaattc 15321257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0051 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: scaffold0051
Description:

Target: scaffold0051; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 234 - 305
Target Start/End: Original strand, 62061 - 62132
Alignment:
Q  234 atctatatactaatataaaaatacatgtccattgaattttcaattttgcccctaggaggggcaatttagtaa 305  Q
    |||||||||||||||||||| |  ||||||||||| ||| | |||||||||||| |||||||||||| ||||    
T  62061 atctatatactaatataaaagttaatgtccattgattttaccattttgcccctatgaggggcaatttggtaa 62132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0051; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 266 - 308
Target Start/End: Original strand, 53387 - 53429
Alignment:
Q  266 tgaattttcaattttgcccctaggaggggcaatttagtaattc 308  Q
    ||||||| ||||||||||||||| ||||||||||| |||||||    
T  53387 tgaatttccaattttgcccctagaaggggcaatttggtaattc 53429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 237 - 294
Target Start/End: Complemental strand, 18953 - 18896
Alignment:
Q  237 tatatactaatataaaaatacatgtccattgaattttcaattttgcccctaggagggg 294  Q
    ||||||||| |||||||||||||||||||||| |||   |||||||||||||||||||    
T  18953 tatatactattataaaaatacatgtccattgattttatcattttgcccctaggagggg 18896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 233 - 306
Target Start/End: Complemental strand, 32677272 - 32677199
Alignment:
Q  233 aatctatatactaatataaaaatacatgtccattgaattttcaattttgcccctaggaggggcaatttagtaat 306  Q
    |||||||||||| |||| |||||| |||||| |||||||| | ||||||||||||  ||||||||||| |||||    
T  32677272 aatctatatacttatattaaaataaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaat 32677199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 234 - 305
Target Start/End: Original strand, 28607220 - 28607291
Alignment:
Q  234 atctatatactaatataaaaatacatgtccattgaattttcaattttgcccctaggaggggcaatttagtaa 305  Q
    ||||||||||| |||| |||||| ||||||||||||||| | |||||| |||||  ||||||||||| ||||    
T  28607220 atctatatacttatattaaaataaatgtccattgaatttaccattttgtccctataaggggcaatttggtaa 28607291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 234 - 300
Target Start/End: Complemental strand, 10050277 - 10050211
Alignment:
Q  234 atctatatactaatataaaaatacatgtccattgaattttcaattttgcccctaggaggggcaattt 300  Q
    ||||||||||| |||| |||| | |||||| |||||||| | ||||||||||||  |||||||||||    
T  10050277 atctatatacttatattaaaagaaatgtcctttgaatttaccattttgcccctattaggggcaattt 10050211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 236 - 305
Target Start/End: Complemental strand, 9545861 - 9545792
Alignment:
Q  236 ctatatactaatataaaaatacatgtccattgaattttcaattttgcccctaggaggggcaatttagtaa 305  Q
    ||||||||| |||| |||| | |||||| |||||||| | ||||||||||||  ||||||||||| ||||    
T  9545861 ctatatacttatattaaaagaaatgtcctttgaatttaccattttgcccctattaggggcaatttggtaa 9545792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 234 - 306
Target Start/End: Complemental strand, 10876657 - 10876587
Alignment:
Q  234 atctatatactaatataaaaatacatgtccattgaattttcaattttgcccctaggaggggcaatttagtaat 306  Q
    |||||||||||||||  |||| | |||||| |||||||| | ||||||||||||  ||||||||||| |||||    
T  10876657 atctatatactaataagaaaagaaatgtcccttgaatttaccattttgccccta--aggggcaatttggtaat 10876587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 237 - 306
Target Start/End: Original strand, 17836969 - 17837038
Alignment:
Q  237 tatatactaatataaaaatacatgtccattgaattttcaattttgcccctaggaggggcaatttagtaat 306  Q
    |||||||| |||| |||| | |||||| |||||||| | ||||||||||||  ||||||||||| |||||    
T  17836969 tatatacttatattaaaagaaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaat 17837038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 237 - 305
Target Start/End: Original strand, 2952759 - 2952827
Alignment:
Q  237 tatatactaatataaaaatacatgtccattgaattttcaattttgcccctaggaggggcaatttagtaa 305  Q
    |||||||| |||| |||| | |||||| |||||||| | ||||||||||||  ||||||||||| ||||    
T  2952759 tatatacttatattaaaagaaatgtcctttgaatttaccattttgcccctattaggggcaatttggtaa 2952827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.000000000008; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 233 - 305
Target Start/End: Complemental strand, 4466509 - 4466437
Alignment:
Q  233 aatctatatactaatataaaaatacatgtccattgaattttcaattttgcccctaggaggggcaatttagtaa 305  Q
    ||||||||||||||||||||| |  ||||||||||| ||| | ||||| ||| ||||||||||||||| ||||    
T  4466509 aatctatatactaatataaaagttaatgtccattgattttaccattttacccttaggaggggcaatttggtaa 4466437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 235 - 305
Target Start/End: Complemental strand, 25620801 - 25620731
Alignment:
Q  235 tctatatactaatataaaaatacatgtccattgaattttcaattttgcccctaggaggggcaatttagtaa 305  Q
    |||||| ||| |||||||| | |||||||||||| ||| | |||||||||||| |||||||||||| ||||    
T  25620801 tctatacactgatataaaagttcatgtccattgattttactattttgcccctatgaggggcaatttggtaa 25620731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 240 - 305
Target Start/End: Original strand, 7389203 - 7389268
Alignment:
Q  240 atactaatataaaaatacatgtccattgaattttcaattttgcccctaggaggggcaatttagtaa 305  Q
    |||||||||||||| |  ||||||||||| ||| | |||||||||| |||||||||||||| ||||    
T  7389203 atactaatataaaagttaatgtccattgattttaccattttgccccaaggaggggcaatttggtaa 7389268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 234 - 306
Target Start/End: Original strand, 36776403 - 36776475
Alignment:
Q  234 atctatatactaatataaaaatacatgtccattgaattttcaattttgcccctaggaggggcaatttagtaat 306  Q
    |||||||||||||||  |||| | |||||| |||||||| | ||||||||||||  ||||||||||| |||||    
T  36776403 atctatatactaataagaaaagaaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaat 36776475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 251 - 306
Target Start/End: Complemental strand, 40587763 - 40587708
Alignment:
Q  251 aaaatacatgtccattgaattttcaattttgcccctaggaggggcaatttagtaat 306  Q
    |||||| ||||||||||||||| | ||||||||||||  ||||||||||| |||||    
T  40587763 aaaataaatgtccattgaatttaccattttgcccctataaggggcaatttggtaat 40587708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 244 - 306
Target Start/End: Original strand, 41972965 - 41973027
Alignment:
Q  244 taatataaaaatacatgtccattgaattttcaattttgcccctaggaggggcaatttagtaat 306  Q
    |||||||||| || |||||| |||||||| | ||||||||||||  ||||||||||| |||||    
T  41972965 taatataaaattaaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaat 41973027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 240 - 305
Target Start/End: Complemental strand, 25616580 - 25616515
Alignment:
Q  240 atactaatataaaaatacatgtccattgaattttcaattttgcccctaggaggggcaatttagtaa 305  Q
    |||||||||||||| |  ||||||||||| ||| | ||||||||| || |||||||||||| ||||    
T  25616580 atactaatataaaagttaatgtccattgattttaccattttgcccttaagaggggcaatttggtaa 25616515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 234 - 306
Target Start/End: Original strand, 24053913 - 24053985
Alignment:
Q  234 atctatatactaatataaaaatacatgtccattgaattttcaattttgcccctaggaggggcaatttagtaat 306  Q
    |||||||||||||||  |||| | |||||| |||||||| | ||||||| ||||  ||||||||||| |||||    
T  24053913 atctatatactaataagaaaagaaatgtcccttgaatttaccattttgctcctataaggggcaatttggtaat 24053985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 234 - 305
Target Start/End: Original strand, 225434 - 225505
Alignment:
Q  234 atctatatactaatataaaaatacatgtccattgaattttcaattttgcccctaggaggggcaatttagtaa 305  Q
    ||||||||||| |||| |||| | ||||||||||||||| | ||||||||||||  ||||||||||| ||||    
T  225434 atctatatacttatattaaaagaaatgtccattgaatttaccattttgcccctataaggggcaatttggtaa 225505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0759 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0759
Description:

Target: scaffold0759; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 232 - 305
Target Start/End: Complemental strand, 5981 - 5908
Alignment:
Q  232 aaatctatatactaatataaaaatacatgtccattgaattttcaattttgcccctaggaggggcaatttagtaa 305  Q
    |||||||||||||||||||||| |  ||||||  ||||||| | ||||||||||||  ||||||||||| ||||    
T  5981 aaatctatatactaatataaaagttaatgtcccatgaatttaccattttgcccctataaggggcaatttggtaa 5908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0057 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 234 - 305
Target Start/End: Complemental strand, 20667 - 20596
Alignment:
Q  234 atctatatactaatataaaaatacatgtccattgaattttcaattttgcccctaggaggggcaatttagtaa 305  Q
    ||||||||||| |||| |||| | |||||| |||||||| | ||||||||||||  ||||||||||| ||||    
T  20667 atctatatacttatattaaaagaaatgtcctttgaatttaccattttgcccctattaggggcaatttggtaa 20596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University