View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11827_high_38 (Length: 304)
Name: NF11827_high_38
Description: NF11827
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11827_high_38 |
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Alignment Details
Target: chr1 (Bit Score: 284; Significance: 1e-159; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 1 - 296
Target Start/End: Complemental strand, 43222082 - 43221787
Alignment:
| Q |
1 |
taagaaattcttactgaagacgctgcgtcttcaagtgtgggaaaaaagagtagatcaatttaagcttggtgaaggtgttatgccagctagtttcaaagtc |
100 |
Q |
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| T |
43222082 |
taagaacttcttactgaagacgctgcgtcttcaagggtgggaaaaaagagtagatcaatttaagcttggtgaaggtgttatgccagctagtttcaaagtc |
43221983 |
T |
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| Q |
101 |
cttcatgatgctgttaggaaaacagatactcttattgcagattttggtgaaagtgcaattggaagagttgctcctgttgactctggattttggtggatca |
200 |
Q |
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| T |
43221982 |
cttcatgatgctgttaggaaaacagatactcttattgcagattttggtgaaagtgcaattggaagagttgctcctgttgactctggattttggtggatca |
43221883 |
T |
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| Q |
201 |
ttttgcttcgtgcttacacaaaatctacaggggatttaactctgtctgaatctgatgattgtcaaaaaggaatgaaacttatattgaccctatgct |
296 |
Q |
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| T |
43221882 |
ttttgcttcgtgcttacacaaaatctacaggggatttaactctgtctgaatctgatgattgtcaaaaaggaatgaaacttatattgactctatgct |
43221787 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 28 - 288
Target Start/End: Complemental strand, 43231473 - 43231213
Alignment:
| Q |
28 |
tcttcaagtgtgggaaaaaagagtagatcaatttaagcttggtgaaggtgttatgccagctagtttcaaagtccttcatgatgctgttaggaaaacagat |
127 |
Q |
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| T |
43231473 |
tcttcaggggtgggagaaaagagtagataggtttaaacttggggaaggtgtgatgccagctagtttcaaagtcctgcatgatgccgttaggaaaacagat |
43231374 |
T |
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| Q |
128 |
actcttattgcagattttggtgaaagtgcaattggaagagttgctcctgttgactctggattttggtggatcattttgcttcgtgcttacacaaaatcta |
227 |
Q |
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| T |
43231373 |
actcttattgcagattttggcgaaagtgcaatcggaagagttgctcctgttgactctggattctggtggatcattttgcttcgtgcttacacaaaatcta |
43231274 |
T |
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| Q |
228 |
caggggatttaactctgtctgaatctgatgattgtcaaaaaggaatgaaacttatattgac |
288 |
Q |
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| T |
43231273 |
caggggacttaactctgtctgaatctgatagttgtcaaaaaggaatgaagcttatattgac |
43231213 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 71; Significance: 4e-32; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 137 - 231
Target Start/End: Complemental strand, 55112614 - 55112520
Alignment:
| Q |
137 |
gcagattttggtgaaagtgcaattggaagagttgctcctgttgactctggattttggtggatcattttgcttcgtgcttacacaaaatctacagg |
231 |
Q |
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| T |
55112614 |
gcagattttggtgaaagtgcaataggcagggttgctcctgttgattctggattttggtggatcatattgcttcgtgcatacacaaaatctacagg |
55112520 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 43 - 153
Target Start/End: Complemental strand, 7788543 - 7788433
Alignment:
| Q |
43 |
aaaaagagtagatcaatttaagcttggtgaaggtgttatgccagctagtttcaaagtccttcatgatgctgttaggaaaacagatactcttattgcagat |
142 |
Q |
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||||||||||||| ||||||||||| |||| ||| |||| |||| ||||| |||||||||| |||| |||||||| ||| |||||||||| |||| |
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| T |
7788543 |
aaaaagagtagatttatttaagcttgtggaagatgtgatgcaagcttgtttcgaagtccttcacgatgacactaggaaaatagacactcttattgaagat |
7788444 |
T |
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| Q |
143 |
tttggtgaaag |
153 |
Q |
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||||| ||||| |
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| T |
7788443 |
tttggcgaaag |
7788433 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 143 - 231
Target Start/End: Original strand, 28863251 - 28863339
Alignment:
| Q |
143 |
tttggtgaaagtgcaattggaagagttgctcctgttgactctggattttggtggatcattttgcttcgtgcttacacaaaatctacagg |
231 |
Q |
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||||||| ||||||||| || || |||||||||||||| ||||||||||||||||| || || ||||||||||||||||| |||||||| |
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| T |
28863251 |
tttggtggaagtgcaataggcagggttgctcctgttgattctggattttggtggattatattacttcgtgcttacacaaagtctacagg |
28863339 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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