View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11827_high_43 (Length: 285)
Name: NF11827_high_43
Description: NF11827
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11827_high_43 |
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Alignment Details
Target: chr3 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 19 - 274
Target Start/End: Complemental strand, 47057259 - 47057004
Alignment:
| Q |
19 |
aaatggctatttaacattgagatcaagaaatataaaaggaaggaaaataaatggggacgcggcaatgagaacgagaacaggaaagaaacctttgctattg |
118 |
Q |
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| T |
47057259 |
aaatggctatttaacattgagatcaagaaatataaaaggaaggaaaataaatggggacgcggcaatgagaacgagaacaggaaagaaacctttgttattg |
47057160 |
T |
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| Q |
119 |
cctctaaaagaggagaaatgaatcagcttatacgtgccaaattaaaatcaagaaagattacttataatggaaaacttacctatttgagataggtgtaaaa |
218 |
Q |
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| T |
47057159 |
cctctaaaagaggagaaatgaatcagcttatacgtgccaaattaaaatcaagaaagattacttataatggaaaacttacctatttgagataggtgtaaaa |
47057060 |
T |
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| Q |
219 |
cttcaaattaaggcagaagagattattgaggaggttgcctaagaggaaggtgtact |
274 |
Q |
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| T |
47057059 |
cttcaaattaaggcagaagagattattgaggaggttgcctaagaggaaggtgtact |
47057004 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 100; Significance: 2e-49; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 26 - 193
Target Start/End: Complemental strand, 26970383 - 26970217
Alignment:
| Q |
26 |
tatttaacattgagatcaagaaatataaaaggaaggaaaataaatggggacgcggcaatgagaacgagaacaggaaagaaacctttgctattgcctctaa |
125 |
Q |
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| T |
26970383 |
tatttaacgttgagctcaagaaatatataaggtaagaaaataaatggggacgcatcaatgagaacgagaac-ggaaagaaacctttgttattgcctctaa |
26970285 |
T |
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| Q |
126 |
aagaggagaaatgaatcagcttatacgtgccaaattaaaatcaagaaagattacttataatggaaaac |
193 |
Q |
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| T |
26970284 |
aagaggagaagtgaatcagcttctacgtgccaaattaaaatcatgaaagatcactagtaacggaaaac |
26970217 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 17 - 98
Target Start/End: Complemental strand, 26920792 - 26920711
Alignment:
| Q |
17 |
caaaatggctatttaacattgagatcaagaaatataaaaggaaggaaaataaatggggacgcggcaatgagaacgagaacag |
98 |
Q |
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|||| ||| |||||||| ||||| |||||||||||| |||| | | ||||||||||||||||| |||||||||||||||||| |
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| T |
26920792 |
caaagtgggtatttaacgttgagctcaagaaatatataaggtaagcaaataaatggggacgcgtcaatgagaacgagaacag |
26920711 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 132 - 193
Target Start/End: Complemental strand, 26920708 - 26920647
Alignment:
| Q |
132 |
agaaatgaatcagcttatacgtgccaaattaaaatcaagaaagattacttataatggaaaac |
193 |
Q |
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| T |
26920708 |
agaagtgaatcagcttctacgtgccaaattaaaatcatgaaagatcactagtaacggaaaac |
26920647 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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