View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11827_high_5 (Length: 786)
Name: NF11827_high_5
Description: NF11827
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11827_high_5 |
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Alignment Details
Target: chr8 (Bit Score: 640; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 640; E-Value: 0
Query Start/End: Original strand, 1 - 774
Target Start/End: Original strand, 38080921 - 38081712
Alignment:
| Q |
1 |
tggaaaacattctgagagcttgtgttggattggctcctgagaacaacatgatccttgaatacaagtgaagtgaagtaatggttcggttatatatatagga |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||| |
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| T |
38080921 |
tggaaaacattctgagagcttgtgttggattggctcctgagaacaacatgatccttgaatacaagtgaagtgaagtaatgtttcggttatata----gga |
38081016 |
T |
|
| Q |
101 |
ggaatttgggataactcagttcttatgtgcgtgcctaaaacttatcccatataggctcctttatttgttgttatattttgatatgttggttagcatatgt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38081017 |
ggaatttgggataactcagttcttatgtgcgtgcctaaaacttatcccat----gctcctttatttgttgttatattttgatatgttggttagcatatgt |
38081112 |
T |
|
| Q |
201 |
acctaccaacatttgattgtgtcttttctcctgccggcttattttagagcattgagcaggccatgatcttaaacatgtgaaataatattcactcgt---- |
296 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38081113 |
acctaccaacatttgattgtgtcttttctcctgccggcttattttagagcattgagcaggccatgatcttaaacatgtgaaataatattcactcgtgtct |
38081212 |
T |
|
| Q |
297 |
--------ttgtgtttaattccatat----agttttggttttctgtatttgtaattcgcacaacatctctaatggattgtttataacttcaaataacatt |
384 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
38081213 |
taagtattttgtgtttaattccatatatatagttttggttttctgtatttgtaattcgcacaacatctctaatggattgtgtataacttcaaataacatt |
38081312 |
T |
|
| Q |
385 |
gaaaatcagaaattagattattaatatagaaatgatgtgcctgtcgggaaaaacaatcccacaaacgtatcacaagtaacatgacaagtttaaagtcagt |
484 |
Q |
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| T |
38081313 |
gaaaatcagaaattagattattaatatagaaatgatgtgcctgtcgggaaaaacaatcccacaaacgtatcacaagtaacatgacaagtttaaagtcagt |
38081412 |
T |
|
| Q |
485 |
cctata---tattaattcaagtttagccagaactccttattggtcatttttctgttcacatgaaaaattgcatttatcttacttatatattctaataatg |
581 |
Q |
| |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
38081413 |
cctatatattattaattcaagtttagccagaactccttattggtcatttttctgttcacaggaaaaattgcatttatcttacttatatattctaataatg |
38081512 |
T |
|
| Q |
582 |
atcgcgagccttgttcacaaagctaatgacttattgaatttacctttaagaataacatgatgg-------ctattgctgcttaatatgagcaattctatt |
674 |
Q |
| |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||| |
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| T |
38081513 |
atcgcgagccttgttcacaaagctaatgacttgttgaatttacctttaagaataccatgatggctattgcctattgctgcttaatatgagcaattctatt |
38081612 |
T |
|
| Q |
675 |
ctaaggcagttacaagtgactttgattggcccaaagccacacttacgattaaactaaagacatatgttaatgccaccactgcatcctcatcaggtatgtg |
774 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38081613 |
ctaaggcagttacaagtgactttgattggcacaaagccacacttccgattaaactaaagacatatgttaatgccaccactgcatcctcatcaggtatgtg |
38081712 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 47; Significance: 2e-17; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 3 - 69
Target Start/End: Original strand, 39701079 - 39701145
Alignment:
| Q |
3 |
gaaaacattctgagagcttgtgttggattggctcctgagaacaacatgatccttgaatacaagtgaa |
69 |
Q |
| |
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|||||||| ||||||||||||||||||||||||| ||||||||||||||||| || |||||||||| |
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| T |
39701079 |
gaaaacatcatgagagcttgtgttggattggctccagagaacaacatgatcctcgagtacaagtgaa |
39701145 |
T |
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