View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11827_high_51 (Length: 228)
Name: NF11827_high_51
Description: NF11827
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11827_high_51 |
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Alignment Details
Target: chr4 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 209
Target Start/End: Complemental strand, 52188049 - 52187841
Alignment:
| Q |
1 |
ggaagtagaaacaaaaaaggatgcaaaagtaaaattactaaatcaatcaatctatctttaaaatgttgttgaatgtacatttcacctttataaacgtatg |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
52188049 |
ggaagtagaaacaaaaaaggatgcaaaagtaaaattactaaatcaatcaatctatctttaaaatgttgttgaatgtacatttcacctttataaacctatg |
52187950 |
T |
|
| Q |
101 |
atgtcaacttttgccgagggtgagttttgaatcaaaaatccaaccatgtcgtcatctatagatgaagttcggtccgtttttattttcagtgactttaagg |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
52187949 |
atgtcaacttttgccgagggtgagttttgaatcaaaaatcccaccatgtcgtcatctatagatgaagttcggtccgtttttattttcagtgacttcaagg |
52187850 |
T |
|
| Q |
201 |
tacacaagg |
209 |
Q |
| |
|
||||||||| |
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| T |
52187849 |
tacacaagg |
52187841 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 97 - 138
Target Start/End: Original strand, 36590341 - 36590382
Alignment:
| Q |
97 |
tatgatgtcaacttttgccgagggtgagttttgaatcaaaaa |
138 |
Q |
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|||||||||||||| ||| || |||||||||||||||||||| |
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| T |
36590341 |
tatgatgtcaacttctgctgacggtgagttttgaatcaaaaa |
36590382 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 85; Significance: 1e-40; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 29 - 209
Target Start/End: Complemental strand, 38990296 - 38990116
Alignment:
| Q |
29 |
gtaaaattactaaatcaatcaatctatctttaaaatgttgttgaatgtacatttcacctttataaacgtatgatgtcaacttttgccgagggtgagtttt |
128 |
Q |
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||||||||| |||||||||||| |||| ||||||||||||| |||||||| || ||||||| ||||||||||||||||| ||||||||||||||||||| |
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| T |
38990296 |
gtaaaattattaaatcaatcaacctatttttaaaatgttgtcgaatgtacggtttacctttacaaacgtatgatgtcaacctttgccgagggtgagtttt |
38990197 |
T |
|
| Q |
129 |
gaatcaaaaatccaaccatgtcgtcatctatagatgaagttcggtccgtttttattttcagtgactttaaggtacacaagg |
209 |
Q |
| |
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| T |
38990196 |
gaatcaaaaattctaccacatcattacatatagatgtagtttggtccgtttctattttcagggacttcaagttatacaagg |
38990116 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 42 - 209
Target Start/End: Original strand, 43862989 - 43863156
Alignment:
| Q |
42 |
atcaatcaatctatctttaaaatgttgttgaatgtacatttcacctttataaacgtatgatgtcaacttttgccgagggtgagttttgaatcaaaaatcc |
141 |
Q |
| |
|
||||| |||| ||| |||||||||| |||||||| |||||||||||||||||||||| ||||||||| |||| |||||||||||||||||||||||| | |
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| T |
43862989 |
atcaaacaatttatatttaaaatgtcgttgaatgcacatttcacctttataaacgtacgatgtcaacctttgtcgagggtgagttttgaatcaaaaagtc |
43863088 |
T |
|
| Q |
142 |
aaccatgtcgtcatctatagatgaagttcggtccgtttttattttcagtgactttaaggtacacaagg |
209 |
Q |
| |
|
||||| |||||| ||| ||||||| | | || ||| |||||||||||||| ||| ||||||||| |
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|
| T |
43863089 |
taccatttcgtcacgtatcgatgaaggtatgaccactttaattttcagtgacttcaagttacacaagg |
43863156 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 39 - 138
Target Start/End: Original strand, 43866458 - 43866558
Alignment:
| Q |
39 |
taaatcaatcaatctatctttaaaatgttgttgaatgtacattt-cacctttataaacgtatgatgtcaacttttgccgagggtgagttttgaatcaaaa |
137 |
Q |
| |
|
|||| ||| |||||||| ||||||||||||||||||| |||||| |||||||||||| ||||||||||||| |||| ||||||||||||||||||||||| |
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| T |
43866458 |
taaagcaaacaatctatttttaaaatgttgttgaatgcacattttcacctttataaatgtatgatgtcaacctttgtcgagggtgagttttgaatcaaaa |
43866557 |
T |
|
| Q |
138 |
a |
138 |
Q |
| |
|
| |
|
|
| T |
43866558 |
a |
43866558 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 39 - 209
Target Start/End: Original strand, 43874140 - 43874307
Alignment:
| Q |
39 |
taaatcaatcaatctatctttaaaatgttgttgaatgtacatttcacctttataaacgtatgatgtcaacttttgccgagggtgagttttgaatcaaaaa |
138 |
Q |
| |
|
|||||||| |||||||| |||||||||||| |||| |||||||||||||||||||||| ||||||||| |||| | |||||||||||||||||||||| |
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|
| T |
43874140 |
taaatcaaacaatctatttttaaaatgttg---aatgcacatttcacctttataaacgtaggatgtcaacctttgtcaagggtgagttttgaatcaaaaa |
43874236 |
T |
|
| Q |
139 |
tccaaccatgtcgtcatctatagatgaagttcggtccgtttttattttcagtgactttaaggtacacaagg |
209 |
Q |
| |
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| ||||| |||||| ||| ||||||| | | ||| ||| |||||| ||||||| ||| ||||||||| |
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| T |
43874237 |
gtccaccatttcgtcacgtatcgatgaaggtatggccgctttaattttcggtgacttcaagttacacaagg |
43874307 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 51; Significance: 2e-20; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 6 - 208
Target Start/End: Original strand, 777079 - 777283
Alignment:
| Q |
6 |
tagaaacaaaaaaggatgcaaaagtaaaattactaaatcaatcaatctatctttaaaatgttgttgaatgtacatttcacctt-tataaac--gtatgat |
102 |
Q |
| |
|
|||||||| | |||||||||||| ||| ||||||||| ||| |||||||||||||||| ||||||||||| || ||||||||| || | | ||| ||| |
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|
| T |
777079 |
tagaaacagagaaggatgcaaaaataacattactaaaccaaacaatctatctttaaaa-gttgttgaatgcacctttcaccttataatatcttgtaagat |
777177 |
T |
|
| Q |
103 |
gtcaacttttgccgagggtgagttttgaatcaaaaatccaaccatgtcgtcatctatagatgaagttcggtccgtttttattttcagtgactttaaggta |
202 |
Q |
| |
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||||| |||||||| ||||||||||||||||| || | | ||| ||||| ||| ||||||| | ||| ||||||||||||| |||||| ||| || |
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| T |
777178 |
atcaacctttgccgatggtgagttttgaatcaataagtctatcattccgtcaggtattgatgaagataggtatgtttttattttcaatgacttcaagtta |
777277 |
T |
|
| Q |
203 |
cacaag |
208 |
Q |
| |
|
|||||| |
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|
| T |
777278 |
cacaag |
777283 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 98 - 138
Target Start/End: Complemental strand, 1187684 - 1187644
Alignment:
| Q |
98 |
atgatgtcaacttttgccgagggtgagttttgaatcaaaaa |
138 |
Q |
| |
|
||||||| ||| |||||||||||||||||||||| |||||| |
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|
| T |
1187684 |
atgatgtgaacctttgccgagggtgagttttgaagcaaaaa |
1187644 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 101 - 138
Target Start/End: Complemental strand, 28092200 - 28092163
Alignment:
| Q |
101 |
atgtcaacttttgccgagggtgagttttgaatcaaaaa |
138 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
28092200 |
atgtcaacctttgccgagggtgagttttgaatcaaaaa |
28092163 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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