View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11827_high_7 (Length: 745)
Name: NF11827_high_7
Description: NF11827
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11827_high_7 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 545; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 545; E-Value: 0
Query Start/End: Original strand, 175 - 727
Target Start/End: Complemental strand, 38936131 - 38935579
Alignment:
| Q |
175 |
tgaatcattgtcattgaacactaatatcaaggactttggaataagtagtagccttaggaatggttatgtaaagaacaccatccttaacctcagccttaat |
274 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38936131 |
tgaaccattgtcattgaacactaatatcaaggactttggaataagtagtagccttaggaatggttatgtaaagaacaccatccttaacctcagccttaat |
38936032 |
T |
|
| Q |
275 |
attctcaaactgcacattctctggcaaagcaattctgctactatacctaccatagctcttagaccattcttcatcttcatcattcttcttcttaggtgct |
374 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38936031 |
attctcaaactgcacattctctggcaaagcaattctgctactatacctaccatagctcttagaccattcttcatcttcatcattcttcttcttaggtgct |
38935932 |
T |
|
| Q |
375 |
ttctcagctttcacaaccagcatcttttcttccacccaaaccttaacatcctctttgttcataccaggcatatcaaacctcatcttatattcactttctc |
474 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
38935931 |
ttctcagctttcacaaccagcatcttttcttccacccaaaccttaacatcctctttgttcataccaggcatatcaaacctcatcttgtattcactttctc |
38935832 |
T |
|
| Q |
475 |
cttctttaatctcccatggtgttcttcccctccttctatacccgcctactccttcaatcggcagcggcgatgaaggccactcaattgtgctcattgcaaa |
574 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38935831 |
cttctttaatctcccatggtgttcttcccctccttctatacccgcctactccttcaatcggcagcggcgatgaaggccactcaattgtgctcattgcaaa |
38935732 |
T |
|
| Q |
575 |
tgggtcttccatcatgctttccattgtttccatcatctcttgcactgtccttgtcgtaggaaatcgatcccataaccctatcggtgcagcaggaaaaact |
674 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38935731 |
tgggtcttccatcatgctttccattgtttccatcatctcttgcactgtccttgtcgtaggaaatcgatcccataaccctatcggtgcagcaggaaaaact |
38935632 |
T |
|
| Q |
675 |
ctcttcttaggttgggactgatggtgtttaatgttgtttgatcttgaaacatg |
727 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38935631 |
ctcttcttaggttgggactgatggtgtttaatgttgtttgatcttgaaacatg |
38935579 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 13 - 76
Target Start/End: Complemental strand, 38936293 - 38936230
Alignment:
| Q |
13 |
agcacagacagctgcgccataacacaagtgacttccctccataatagagaggcttcctcacaac |
76 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38936293 |
agcacagacagctgcgccataacacaagtgacttccctccataatagagaggcttcctcacaac |
38936230 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 381 - 445
Target Start/End: Complemental strand, 20878882 - 20878818
Alignment:
| Q |
381 |
gctttcacaaccagcatcttttcttccacccaaaccttaacatcctctttgttcataccaggcat |
445 |
Q |
| |
|
|||||||| ||||||||||| ||||| | ||| ||||||||||| | |||||||||||||||||| |
|
|
| T |
20878882 |
gctttcactaccagcatcttctcttcaatccacaccttaacatcttttttgttcataccaggcat |
20878818 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University