View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11827_low_1 (Length: 1082)
Name: NF11827_low_1
Description: NF11827
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11827_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 548; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 548; E-Value: 0
Query Start/End: Original strand, 18 - 585
Target Start/End: Original strand, 35834853 - 35835420
Alignment:
| Q |
18 |
agggagggtatctgaattagaaatagcatgaaatatagattactagattaagtcaactgaactgttggacttttaaacttctgaggaaatagcctctaat |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35834853 |
agggagggtatctgaattagaaatagcatgaaatatagattactagattaagtcaactgaactgttggacttttaaacttctgaggaaatagcctctaat |
35834952 |
T |
|
| Q |
118 |
ttaatctttcaatgaagagatggattaacaaatagggtaaaacagcgaagaatccttacagagattttaagtgattaagtttcccaagatgaggagtcaa |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35834953 |
ttaatctttcaatgaagagatggattaacaaatagggtaaaacagtgaagaatccttacagagattttaagtgattaagtttcccaagatgaggagtcaa |
35835052 |
T |
|
| Q |
218 |
tgtcccttccaatgattggccatttaggtccctgcaagaaatagcaagaagatacaaaatcctataagcacaaaatattcaacactgtattcacctcaat |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35835053 |
tgtcccttccaatgattggccatttaggtccctgcaagaaatagcaagaagatacaaaatcctataagcacaaaatattcaacactgtattcacctcaat |
35835152 |
T |
|
| Q |
318 |
caaaatggaagctttcttcaaacgtcaagaaccgttacatgaataagtcgtcatgaaaaaataacagcactgtctcactggaaaacttaaaaggaggaaa |
417 |
Q |
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| T |
35835153 |
caaaatggaagctttcttcaaacgtcaagaaccattacgtgtattagtcgtcatgaaaaaataacagcactgtctcactggaaaacttaaaaggaggaaa |
35835252 |
T |
|
| Q |
418 |
ccaaaggaacttacaggatttgcactttaccatcaacacaatgaactcccatccacttgcaagggttggaatcatttggattccaatttagtagagcacc |
517 |
Q |
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| T |
35835253 |
ccaaaggaacttacaggatttgcactttaccatcaacacaatgaactcccatccacttgcaagggttggaatcatttggattccaatttagtagagcacc |
35835352 |
T |
|
| Q |
518 |
atacggatcagaaattattcttacccgaaattcccacaaagcaattcctgcaaagttccattccaatt |
585 |
Q |
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| T |
35835353 |
atacggatcagaaattattcttacccgaaattcccacaaagcaattcctgcaaagttccattccaatt |
35835420 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 649 - 1065
Target Start/End: Original strand, 35835484 - 35835901
Alignment:
| Q |
649 |
cattgtaagttgtaaaaggctaattcataaaaatcaccttcatcattcagagaccagcacagtcgaattccccagatacaaatcaatccaatataaattc |
748 |
Q |
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| T |
35835484 |
cattgtaagttgtaaaaggctaattcataaaaatcaccttcatcattcagagaccagcacagtcgaattccccagatacaaatcaatccaatataaattc |
35835583 |
T |
|
| Q |
749 |
tgagccataatccaaaccgatcccatatgcattccattgcagtaggaaggcagtggtcgctttggtagaggcgcagatttgtatctctctttataagcta |
848 |
Q |
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| T |
35835584 |
tgagccataatccaaaccgatcccatatgcattccattgcagtaggaaggcagtggtcgctttggtagaggcgcagatttgtatctctctttataagcta |
35835683 |
T |
|
| Q |
849 |
gaagctatatgatatgtcaaatcattgtacaaaatttggcaaggtttaactgtaaatagaaacccttaagccttttgagatgaaggtaactaatcaacta |
948 |
Q |
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| T |
35835684 |
gaagctatatgatatgtcaaatcattgtacaaaatttggcaaggtttaactgtaaatagaaacccttaagccttttgagatgaaggtaactaatcaacta |
35835783 |
T |
|
| Q |
949 |
agcaaaacttgtatgttacaaaggaaagcaaaaataaatgcagcagttggtacaaagataacatcagggtctctcat-tttctatgaatccttccttaca |
1047 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
35835784 |
agcaaaacttgtatgttacaaaggaaagcaaaaataaatgcagcagttggtacaaagataacatcagggtctctcatccttctatgaatccttccttaca |
35835883 |
T |
|
| Q |
1048 |
acccttccctcaacaaat |
1065 |
Q |
| |
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|||||||||||||||||| |
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| T |
35835884 |
acccttccctcaacaaat |
35835901 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 56; Significance: 1e-22; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 170 - 257
Target Start/End: Complemental strand, 4971415 - 4971328
Alignment:
| Q |
170 |
tccttacagagattttaagtgattaagtttcccaagatgaggagtcaatgtcccttccaatgattggccatttaggtccctgcaagaa |
257 |
Q |
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|||||||||||||||||||||| | ||||||||||| | ||||| ||||||||||||||||||| | |||||||||||||| |||||| |
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| T |
4971415 |
tccttacagagattttaagtgacttagtttcccaagctcaggagccaatgtcccttccaatgatagcccatttaggtccctacaagaa |
4971328 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 170 - 257
Target Start/End: Complemental strand, 4989324 - 4989237
Alignment:
| Q |
170 |
tccttacagagattttaagtgattaagtttcccaagatgaggagtcaatgtcccttccaatgattggccatttaggtccctgcaagaa |
257 |
Q |
| |
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|||||||||||||||||||||| | ||||||||||| | ||||| ||||||||||||||||||| | |||||||||||||| |||||| |
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| T |
4989324 |
tccttacagagattttaagtgacttagtttcccaagctcaggagccaatgtcccttccaatgatagcccatttaggtccctacaagaa |
4989237 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 417 - 506
Target Start/End: Complemental strand, 4971157 - 4971068
Alignment:
| Q |
417 |
accaaaggaacttacaggatttgcactttaccatcaacacaatgaactcccatccacttgcaagggttggaatcatttggattccaattt |
506 |
Q |
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| T |
4971157 |
accacaggaacttacagcatctgcactttaccatcgacgcagtggacaccaaaccagttgcaagggtcacaatcatttggattccaattt |
4971068 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 417 - 506
Target Start/End: Complemental strand, 4989066 - 4988977
Alignment:
| Q |
417 |
accaaaggaacttacaggatttgcactttaccatcaacacaatgaactcccatccacttgcaagggttggaatcatttggattccaattt |
506 |
Q |
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|||| |||||||||||| || |||||||||||||| || || || || || | ||| |||||||||| |||||||||||||||||||| |
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| T |
4989066 |
accacaggaacttacagcatctgcactttaccatcgacgcagtggacaccaaaccagttgcaagggtcacaatcatttggattccaattt |
4988977 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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