View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11827_low_10 (Length: 648)
Name: NF11827_low_10
Description: NF11827
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11827_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 604; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 604; E-Value: 0
Query Start/End: Original strand, 18 - 637
Target Start/End: Original strand, 43397483 - 43398102
Alignment:
| Q |
18 |
tggacatggaaagccttttggtgactggtaaactgagcgtcctcatggttggacaagacgtcttaagcgcgactaacgaggttggttcaaatgaataatt |
117 |
Q |
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| T |
43397483 |
tggacatggaaagccttttggtgactggtaaactgagcgtcctcatggttggacaagacgtcttaagcgcgactaacgaggttggttcaaatgaataatt |
43397582 |
T |
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| Q |
118 |
gatgaatgtgaacattggttttaaaaataaatttgatgccaaggcaatgtgctacgtgcattatgattaattttatggctcaatttattctcaggttgga |
217 |
Q |
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| T |
43397583 |
gatgaatgtgaacattggttttaaaaataagtttgatgccaaggcaatgtgctacgtgcattatgattaattttattgcccaatttattctcaggttgga |
43397682 |
T |
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| Q |
218 |
tctcaatgcaccgttctcacagataattactgtgaggatgcatatgatctacttcagaactctgtgctgaagaaactattggtaaattcatcgcattctt |
317 |
Q |
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| T |
43397683 |
tctcaatgcaccgttctcacagataattactgtgaggatgcatatgatctacttcagaactctgtgctgaagaaactattggtaaattcatcgcattctt |
43397782 |
T |
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| Q |
318 |
agataatttctcgataattacttttggtataattcttaggatattactctatgcttatatgttatttttcagcttgctggtattctgctagatacacaga |
417 |
Q |
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| T |
43397783 |
agataatttctcgataagtacttttggtataattcttaggatattactctatgcttatatgttatttttcagcttgctggtattctgctagatacacaga |
43397882 |
T |
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| Q |
418 |
atctaaaagcttcggctgcagtatcgatgacaagagatgcagaggcagtccagctgcttttggttggcttagccccaaactacagatatgctttatttga |
517 |
Q |
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| T |
43397883 |
atctaaaagcttcggctgcagtatcgatgacaagagatgcagaggcagtccagctgcttttggttggcttagccccaaactacagatatgctttatttga |
43397982 |
T |
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| Q |
518 |
tcagtgtaagatttatgtttccccacacattgaaattgagaagttattgataatattcaagttcaatgtattaacttgttgtgtttcttgaagtgatgca |
617 |
Q |
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| T |
43397983 |
tcagtgtaagatttatgtttccccacacattgaaattgagaagttattgataatattcaagttcaatgtattaacttgttgtgtttcttgaagtgatgca |
43398082 |
T |
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| Q |
618 |
agaccaacaatcttcttctt |
637 |
Q |
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| T |
43398083 |
agaccaacaatcttcttctt |
43398102 |
T |
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