View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11827_low_11 (Length: 605)
Name: NF11827_low_11
Description: NF11827
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11827_low_11 |
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Alignment Details
Target: chr8 (Bit Score: 518; Significance: 0; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 518; E-Value: 0
Query Start/End: Original strand, 1 - 593
Target Start/End: Original strand, 3740703 - 3741295
Alignment:
| Q |
1 |
ttttatttatattatcaatttgttttaacctgtccatatagtctctttaggagccaac---atttgacaaagtttatggggctggaaatcaaacttttaa |
97 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
3740703 |
ttttatttatattatcaatttgttttaatctgtccatatagtctctctaggagccaacaacatttgacaaagtttatggggctggaaatcaaacttttaa |
3740802 |
T |
|
| Q |
98 |
tttattattatcaatttcttttaatttgtacatatagtctatctaggaggtaaaacatgacaaaacttattgaacaagaaatcaaataatttgaaggtta |
197 |
Q |
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| T |
3740803 |
tttattattatcaatttcttttaatttgtacatatagtctatctaggaggtaaaccatgacaaaacttattgaacaagaaatcaaataatttgaaggtta |
3740902 |
T |
|
| Q |
198 |
tatgtaagggtgataatagaccagatcggcagttgtctgcgacctatcatacgacatgtctagcctagggaaactctatcattgtgacttcttcccacaa |
297 |
Q |
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||||||||||||||||||||||| |||| ||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
3740903 |
tatgtaagggtgataatagaccaaatcgacagttgtttgcgacctatcatacgacatgtctagcctagggaaagtctatcattgtgacttcttcccacaa |
3741002 |
T |
|
| Q |
298 |
cctcaatatcaagggagtctgctcacaaaagttcattgtaataagaaagcaagaagtaaagaaacaaaactgt-ttgaaactgcaaataagacacaagag |
396 |
Q |
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| T |
3741003 |
cctcaatatcaagggagtctgctcacaaaagttcattgtaataaaaaagcaagaagtaaagaaacaaaactgtattgaaactgcaaataagacacaagag |
3741102 |
T |
|
| Q |
397 |
tttctatatatgtgtaatggatgatgagaaaagtttagattacaagcaaatatatagacactaagccacaaatttgtgtgttaggagtaagtgttgttaa |
496 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
3741103 |
tttc----tatgtgtaatggatgatgagaaaagtttagattacaagcaaatatatagacattaagccacaaatttgtgtgttaggagtaagtgttgttaa |
3741198 |
T |
|
| Q |
497 |
ttacaagaaactattggaatccgcaaagtataactcccaaattatctttagactatggtcgtaatgtggcattagatgcacatgcaatgttttatgt |
593 |
Q |
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| T |
3741199 |
ttacaagaaactattggaatccgcaaagtataactcccaaattatctttagactatggtcgtaatgtggcattacatgcacatgcaatgttttatgt |
3741295 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 28 - 263
Target Start/End: Original strand, 3737264 - 3737503
Alignment:
| Q |
28 |
acctgtccatatagtctctttaggagccaacatttgacaaagtttatggggctggaaatcaaacttttaatttattattatcaatttcttttaatttgta |
127 |
Q |
| |
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||||| ||||||||||||| |||||||||| || |||||| | |||| || || |||||||| ||||||||||||||||||||||| ||||||||||| |
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| T |
3737264 |
acctgcccatatagtctctctaggagccaagatgtgacaacgcttattggtctaaaaatcaaaattttaatttattattatcaattt-ttttaatttgtg |
3737362 |
T |
|
| Q |
128 |
catatagtctatctaggaggtaaaacatgaca-aaacttattgaacaagaaatcaaataatttgaaggttatatgtaagggtgataatagaccag----a |
222 |
Q |
| |
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| T |
3737363 |
ccaatagtttctttaggatctaaaagatgacagaagtttatttgacaagaaatcaaatagtttgaaggttgtatgtaagggtgagaatagaccagaccaa |
3737462 |
T |
|
| Q |
223 |
tcggcagttgtctgcgacctatcatacgacatgtctagcct |
263 |
Q |
| |
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|| || |||||||| ||||||||||||||||||||||| |
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| T |
3737463 |
ccgacatgagtctgcgatctatcatacgacatgtctagcct |
3737503 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 34 - 220
Target Start/End: Original strand, 3729507 - 3729693
Alignment:
| Q |
34 |
ccatatagtctctttaggagccaacatttgacaaagtttatggggctggaaatcaaacttttaatttattattatcaatttcttttaatttgtacatata |
133 |
Q |
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|||||||||||||| || ||||||||| ||||| ||||||||| |||| |||||||| |||||||||| ||||| |||||| ||||||||||| |||||| |
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| T |
3729507 |
ccatatagtctcttcagaagccaacatgtgacagagtttatggagctgaaaatcaaaattttaatttactattagcaatttgttttaatttgtccatata |
3729606 |
T |
|
| Q |
134 |
gtctatctaggaggtaaaacatgacaaaacttattgaacaagaaatcaaataatttgaaggttatatgtaagggtgataatagacca |
220 |
Q |
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| | ||||| | |||||||||||||| ||||||||| |||||||||||||| ||||| | | |||| ||||| ||||||||| |
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| T |
3729607 |
ggttgtctagaaactaaaacatgacaaagtttattgaaccgtaaatcaaataatttaaaggtgacacgtaaaggtgagaatagacca |
3729693 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 13 - 120
Target Start/End: Original strand, 3755215 - 3755322
Alignment:
| Q |
13 |
tatcaatttgttttaacctgtccatatagtctctttaggagccaacatttgacaaagtttatggggctggaaatcaaacttttaatttattattatcaat |
112 |
Q |
| |
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||||||| | |||||| |||||||||||||| |||||||||||| | ||||||||||||| |||| | ||||| || ||| ||||||||||||||||| |
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| T |
3755215 |
tatcaatatattttaatttgtccatatagtctatttaggagccaagacatgacaaagtttattgggccgaaaatctaaatttcaatttattattatcaat |
3755314 |
T |
|
| Q |
113 |
ttctttta |
120 |
Q |
| |
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|| ||||| |
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| T |
3755315 |
ttgtttta |
3755322 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 98 - 161
Target Start/End: Original strand, 3755207 - 3755270
Alignment:
| Q |
98 |
tttattattatcaatttcttttaatttgtacatatagtctatctaggaggtaaaacatgacaaa |
161 |
Q |
| |
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||||||| ||||||| | ||||||||||| |||||||||||| |||||| || |||||||||| |
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| T |
3755207 |
tttattactatcaatatattttaatttgtccatatagtctatttaggagccaagacatgacaaa |
3755270 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 496 - 538
Target Start/End: Original strand, 29551261 - 29551303
Alignment:
| Q |
496 |
attacaagaaactattggaatccgcaaagtataactcccaaat |
538 |
Q |
| |
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| T |
29551261 |
attacaagaaactattggaattcacaaagcataactcccaaat |
29551303 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 272 - 336
Target Start/End: Original strand, 26269841 - 26269906
Alignment:
| Q |
272 |
tctatcattgtgacttcttc-ccacaacctcaatatcaagggagtctgctcacaaaagttcattgt |
336 |
Q |
| |
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|||||||||||||||| || |||||| ||||| ||||||||||||| ||||||| | |||||||| |
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| T |
26269841 |
tctatcattgtgacttattttccacaatctcaagatcaagggagtctactcacaagaattcattgt |
26269906 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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