View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11827_low_12 (Length: 600)
Name: NF11827_low_12
Description: NF11827
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11827_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 154; Significance: 2e-81; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 430 - 595
Target Start/End: Complemental strand, 16580406 - 16580241
Alignment:
| Q |
430 |
cacgtagaatgtcaaaaatattcatcaatgttcaatttacctaactcctacattgtctttaaattttctttttgttttactttgtgataaaatattcctc |
529 |
Q |
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| T |
16580406 |
cacgtagaatgtcaaaaatattcatcaatgttcaatttacctaactcctacattgtctttaaatcttctttttgttttactttgtgataaaatattcatc |
16580307 |
T |
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| Q |
530 |
gtatgatatgataattacgttgacatgcactctaatgacggaaagtttacatcactctctgcttct |
595 |
Q |
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| T |
16580306 |
gtatgatatgataattacgttgacatgcactctaatgacggaaagtttacatcactttctgcttct |
16580241 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 211 - 417
Target Start/End: Complemental strand, 16580645 - 16580445
Alignment:
| Q |
211 |
taaagtcaaaagttaattgataatctgacgttgctgattaaataaccaataattannnnnnnccatagaatgttaaagttgaccaataagaaagttgtct |
310 |
Q |
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| T |
16580645 |
taaagtcaaaagttaattgataatctgacgttactgattaaacaaccaatattttttttcttccatagaatgttaaagttgaccaataagaaagttgtct |
16580546 |
T |
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| Q |
311 |
gcttctgtttcatgctactaggagtggttccctgaagtaatggcgaccagatgaataagatccaatgaagttgaactccaccaacaaatgcagaatatat |
410 |
Q |
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| T |
16580545 |
gcttctgtttcatactactaggagtggttccctgaactaatggcgaccagctgaataagatccaa------taaactccaccaacaaatgcagaatatat |
16580452 |
T |
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| Q |
411 |
atatata |
417 |
Q |
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| T |
16580451 |
atatata |
16580445 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 18 - 100
Target Start/End: Complemental strand, 16580934 - 16580852
Alignment:
| Q |
18 |
aaatcttggagcaacttatatgacgacttcaccgaaaaaactctctcttcctccccctttgccaccataaataatccacttcc |
100 |
Q |
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| T |
16580934 |
aaatcttggagcaacttatatgatgacttcaccgaaaaaactctcccttcctccccctttgccaccataaataatccacttcc |
16580852 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 180 - 213
Target Start/End: Complemental strand, 16580743 - 16580710
Alignment:
| Q |
180 |
cacaacaaagggggaatgagttccatgcaaataa |
213 |
Q |
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| T |
16580743 |
cacaacaaagggggaatgagttccatgcaaataa |
16580710 |
T |
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