View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11827_low_13 (Length: 566)

Name: NF11827_low_13
Description: NF11827
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11827_low_13
NF11827_low_13
[»] scaffold0188 (1 HSPs)
scaffold0188 (21-523)||(9558-10057)
[»] chr3 (2 HSPs)
chr3 (515-566)||(14027982-14028033)
chr3 (257-314)||(23031645-23031702)
[»] chr4 (2 HSPs)
chr4 (140-240)||(13638552-13638652)
chr4 (26-84)||(13638672-13638730)
[»] chr7 (1 HSPs)
chr7 (252-349)||(35169953-35170049)
[»] chr8 (2 HSPs)
chr8 (254-321)||(26762849-26762916)
chr8 (537-565)||(39820397-39820425)
[»] chr2 (1 HSPs)
chr2 (208-312)||(17213752-17213855)
[»] chr1 (6 HSPs)
chr1 (211-241)||(12395505-12395535)
chr1 (264-322)||(39086028-39086086)
chr1 (19-69)||(50981249-50981299)
chr1 (252-308)||(6761585-6761641)
chr1 (530-566)||(12242528-12242564)
chr1 (255-299)||(15867631-15867675)
[»] chr5 (1 HSPs)
chr5 (210-238)||(5951462-5951490)


Alignment Details
Target: scaffold0188 (Bit Score: 371; Significance: 0; HSPs: 1)
Name: scaffold0188
Description:

Target: scaffold0188; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 21 - 523
Target Start/End: Complemental strand, 10057 - 9558
Alignment:
Q  21 attgatagtgagaaagtgtcctgtttgaatcaaaagtctgaccaagatcacctgaaaacgatgctacagcaattagtggacacaatacatattgcattgt 120  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| ||||||||||||||||||||||    
T  10057 attgatagtgagaaagtgtcctgtttgaatcaaaagtctgaccaagatcacctgaaaacgatgcaacagcgattagtagacacaatacatattgcattgt 9958  T
Q  121 ttcaaaatttgtgatgaatattcaattgttccatgtttgtaaagactgaatagtagctacaaacatcattaaattatgagttgaaagatggatttaattc 220  Q
    |||||||||||||||  ||||||||||||||| |||| |||||||||||||||||||| |||| ||||| ||||||||||||||||||||||||||||||    
T  9957 ttcaaaatttgtgat--atattcaattgttccttgtt-gtaaagactgaatagtagcttcaaatatcataaaattatgagttgaaagatggatttaattc 9861  T
Q  221 atatacactgtcagtgtaaaggnnnnnnnatactgtcaatcagtcataatcgtcagatgattaaaaatgtttgactttagttataattacttctgaagtc 320  Q
    ||||||||||||||||||| ||        |||| |||||| |||||| |||||||||||||||||||| |||| |||||||| |||||||||| |||||    
T  9860 atatacactgtcagtgtaatggtttttttgtactttcaatcggtcatagtcgtcagatgattaaaaatgattgattttagttaaaattacttctaaagtc 9761  T
Q  321 acttgatgattggttatggtttgttgacactgtcagtataaaactatttacacaacagtatatataattaaaataatcgaaagatatttcctgcaaaagg 420  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||| || ||||||||||||||| |||||||||||||| ||||||||||||    
T  9760 acttgatgattggttatggtttgttgacactgtcggtataaaactatttacacgactgtatatataattaaactaatcgaaagatatgtcctgcaaaagg 9661  T
Q  421 aaatatttatattattggtcattctcatatgccaacatacataggagactccatccacccaattgaaggatatcttaaaatatcaccaattgaatgattt 520  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||    
T  9660 aaatatttatattattggtcattctcatatgccaacatacataggagactccatccacccaattgaaggatatcttaaaatatcaccgattgaaggattt 9561  T

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Target: chr3 (Bit Score: 44; Significance: 9e-16; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 515 - 566
Target Start/End: Complemental strand, 14028033 - 14027982
Alignment:
Q  515 tgattttctacaaaaattagctgtgtcggtgtctgtgtcgtgtccggtgtcc 566  Q
    |||||||||| |||||||||||||||||||||| ||||||||||||||||||    
T  14028033 tgattttctaaaaaaattagctgtgtcggtgtccgtgtcgtgtccggtgtcc 14027982  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 257 - 314
Target Start/End: Original strand, 23031645 - 23031702
Alignment:
Q  257 caatcagtcataatcgtcagatgattaaaaatgtttgactttagttataattacttct 314  Q
    |||||| |||||||||||| || ||||||||||||| |||||| | | ||||||||||    
T  23031645 caatcaatcataatcgtcaaataattaaaaatgtttcactttaatcagaattacttct 23031702  T

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Target: chr4 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 140 - 240
Target Start/End: Complemental strand, 13638652 - 13638552
Alignment:
Q  140 attcaattgttccatgtttgtaaagactgaatagtagctacaaacatcat-taaattatgagttgaaagatggatttaattcatatacactgtcagtgta 238  Q
    |||||||||||||||||| | |||  ||||||||| |||||||| ||||| |||||| ||| || |||||| ||||||| |||| |||||||||||||||    
T  13638652 attcaattgttccatgtt-gcaaaatctgaatagttgctacaaatatcatataaattctgaatttaaagattgatttaactcatttacactgtcagtgta 13638554  T
Q  239 aa 240  Q
    ||    
T  13638553 aa 13638552  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 26 - 84
Target Start/End: Complemental strand, 13638730 - 13638672
Alignment:
Q  26 tagtgagaaagtgtcctgtttgaatcaaaagtctgaccaagatcacctgaaaacgatgc 84  Q
    ||||||||||||||| ||||||||||| |  ||||||||||||| |||| |||| ||||    
T  13638730 tagtgagaaagtgtcttgtttgaatcatagctctgaccaagatcccctgcaaacaatgc 13638672  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 252 - 349
Target Start/End: Original strand, 35169953 - 35170049
Alignment:
Q  252 actgtcaatcagtcataatcgtcagatgattaaaaatgtttgactttagttataattacttctgaagtcacttgatgattggttatggtttgttgaca 349  Q
    ||||||||||| |  ||||||| |||| |||||| ||||||||||||| | |||| ||||||| |||||||   ||||||||||||| ||||||||||    
T  35169953 actgtcaatcaattgtaatcgttagattattaaagatgtttgactttaatcataactacttctaaagtcac-acatgattggttatgatttgttgaca 35170049  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000005; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 254 - 321
Target Start/End: Original strand, 26762849 - 26762916
Alignment:
Q  254 tgtcaatcagtcataatcgtcagatgattaaaaatgtttgactttagttataattacttctgaagtca 321  Q
    ||||||||| |||||||| |||||| | |||||| ||||||||||| | |||||||||||| ||||||    
T  26762849 tgtcaatcaatcataatcctcagatcagtaaaaacgtttgactttaatcataattacttctaaagtca 26762916  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 537 - 565
Target Start/End: Complemental strand, 39820425 - 39820397
Alignment:
Q  537 gtgtcggtgtctgtgtcgtgtccggtgtc 565  Q
    |||||||||||||||||||||||||||||    
T  39820425 gtgtcggtgtctgtgtcgtgtccggtgtc 39820397  T

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Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 208 - 312
Target Start/End: Complemental strand, 17213855 - 17213752
Alignment:
Q  208 atggatttaattcatatacactgtcagtgtaaaggnnnnnnnatactgtcaatcagtcataatcgtcagatgattaaaaatgtttgactttagttataat 307  Q
    |||||||||||||||||||| |||||||||||| |       ||||||||||||| ||||||| |||| ||  ||||||| |||| |||||  | |||||    
T  17213855 atggatttaattcatatacattgtcagtgtaaa-gatagtttatactgtcaatcaatcataattgtcaaatcgttaaaaacgttttactttgatcataat 17213757  T
Q  308 tactt 312  Q
    |||||    
T  17213756 tactt 17213752  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000005; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 211 - 241
Target Start/End: Original strand, 12395505 - 12395535
Alignment:
Q  211 gatttaattcatatacactgtcagtgtaaag 241  Q
    |||||||||||||||||||||||||||||||    
T  12395505 gatttaattcatatacactgtcagtgtaaag 12395535  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 264 - 322
Target Start/End: Original strand, 39086028 - 39086086
Alignment:
Q  264 tcataatcgtcagatgattaaaaatgtttgactttagttataattacttctgaagtcac 322  Q
    ||||||| |||| || |||||||||||||| ||| | |||||||||||||| |||||||    
T  39086028 tcataattgtcaaattattaaaaatgtttgtcttcaattataattacttctaaagtcac 39086086  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 19 - 69
Target Start/End: Original strand, 50981249 - 50981299
Alignment:
Q  19 caattgatagtgagaaagtgtcctgtttgaatcaaaagtctgaccaagatc 69  Q
    ||||| ||||||||||||||| ||||||||||||||  ||||||| |||||    
T  50981249 caattcatagtgagaaagtgttctgtttgaatcaaagctctgaccgagatc 50981299  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 252 - 308
Target Start/End: Complemental strand, 6761641 - 6761585
Alignment:
Q  252 actgtcaatcagtcataatcgtcagatgattaaaaatgtttgactttagttataatt 308  Q
    ||||||| ||| ||||||| ||||||| ||||||| |||||||||||  ||||||||    
T  6761641 actgtcagtcaatcataattgtcagatcattaaaattgtttgacttttattataatt 6761585  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 530 - 566
Target Start/End: Complemental strand, 12242564 - 12242528
Alignment:
Q  530 attagctgtgtcggtgtctgtgtcgtgtccggtgtcc 566  Q
    |||||||||||||||||  ||||||||||||||||||    
T  12242564 attagctgtgtcggtgttcgtgtcgtgtccggtgtcc 12242528  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 255 - 299
Target Start/End: Complemental strand, 15867675 - 15867631
Alignment:
Q  255 gtcaatcagtcataatcgtcagatgattaaaaatgtttgacttta 299  Q
    |||||||| |||||||||||| || ||||||| ||||||||||||    
T  15867675 gtcaatcaatcataatcgtcatatcattaaaactgtttgacttta 15867631  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 210 - 238
Target Start/End: Original strand, 5951462 - 5951490
Alignment:
Q  210 ggatttaattcatatacactgtcagtgta 238  Q
    |||||||||||||||||||||||||||||    
T  5951462 ggatttaattcatatacactgtcagtgta 5951490  T

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