View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11827_low_15 (Length: 480)

Name: NF11827_low_15
Description: NF11827
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11827_low_15
NF11827_low_15
[»] scaffold0188 (1 HSPs)
scaffold0188 (1-465)||(9065-9529)
[»] chr4 (4 HSPs)
chr4 (115-263)||(13638117-13638265)
chr4 (304-465)||(13637893-13638054)
chr4 (1-47)||(37203221-37203267)
chr4 (1-47)||(23293056-23293102)
[»] chr1 (9 HSPs)
chr1 (124-238)||(50981301-50981415)
chr1 (328-465)||(50981417-50981557)
chr1 (1-46)||(10577805-10577850)
chr1 (1-46)||(41597540-41597585)
chr1 (1-48)||(398835-398882)
chr1 (1-48)||(22881680-22881727)
chr1 (7-47)||(10475047-10475087)
chr1 (3-43)||(26830542-26830582)
chr1 (1-37)||(48040532-48040568)
[»] chr3 (11 HSPs)
chr3 (1-46)||(15796364-15796409)
chr3 (1-47)||(750689-750735)
chr3 (1-46)||(14027959-14028004)
chr3 (1-45)||(16000086-16000130)
chr3 (1-47)||(39756185-39756231)
chr3 (1-46)||(3164095-3164140)
chr3 (1-46)||(10318110-10318155)
chr3 (1-46)||(10335356-10335401)
chr3 (1-46)||(14747511-14747556)
chr3 (3-47)||(4991039-4991083)
chr3 (3-47)||(7171445-7171489)
[»] chr7 (5 HSPs)
chr7 (1-47)||(1433397-1433443)
chr7 (1-46)||(9778452-9778497)
chr7 (3-47)||(13300361-13300405)
chr7 (1-47)||(9408411-9408457)
chr7 (2-44)||(21141053-21141095)
[»] chr5 (8 HSPs)
chr5 (1-47)||(6770486-6770532)
chr5 (1-47)||(15382420-15382466)
chr5 (1-48)||(21522692-21522739)
chr5 (1-48)||(21533258-21533305)
chr5 (1-46)||(20683325-20683370)
chr5 (1-46)||(23016061-23016106)
chr5 (1-41)||(13287469-13287509)
chr5 (5-45)||(28862262-28862302)
[»] scaffold0652 (1 HSPs)
scaffold0652 (1-44)||(532-575)
[»] chr8 (4 HSPs)
chr8 (3-46)||(20785531-20785574)
chr8 (1-46)||(24413630-24413675)
chr8 (1-46)||(43737883-43737928)
chr8 (1-45)||(926858-926902)
[»] scaffold0116 (1 HSPs)
scaffold0116 (1-47)||(9841-9887)
[»] scaffold0053 (1 HSPs)
scaffold0053 (1-47)||(8741-8787)
[»] scaffold0027 (1 HSPs)
scaffold0027 (1-47)||(46625-46671)
[»] chr6 (4 HSPs)
chr6 (1-47)||(7938059-7938105)
chr6 (1-47)||(9107440-9107486)
chr6 (1-46)||(8777043-8777088)
chr6 (1-46)||(18367781-18367826)
[»] chr2 (2 HSPs)
chr2 (1-47)||(26769460-26769506)
chr2 (1-46)||(28412294-28412339)
[»] scaffold0475 (1 HSPs)
scaffold0475 (3-44)||(3262-3303)
[»] scaffold0136 (1 HSPs)
scaffold0136 (5-46)||(3928-3969)
[»] scaffold0021 (1 HSPs)
scaffold0021 (1-46)||(130426-130471)


Alignment Details
Target: scaffold0188 (Bit Score: 389; Significance: 0; HSPs: 1)
Name: scaffold0188
Description:

Target: scaffold0188; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 1 - 465
Target Start/End: Complemental strand, 9529 - 9065
Alignment:
Q  1 tgtccgtgtcgtgttcggtgtccgtttccatatccgtgcttcataggaactgatcaatgtgaacatgcttgtaccacaatgatatctcataaaagtaaaa 100  Q
    ||||| ||| |||| |||||||||||||  |||| ||||||||||| ||||||||||||| ||||||||||||||||||  |||||||||||| | ||||    
T  9529 tgtccatgttgtgtccggtgtccgtttctgtatctgtgcttcatagaaactgatcaatgtaaacatgcttgtaccacaacaatatctcataaaggcaaaa 9430  T
Q  101 caaccatgaaagattacactttacctatgagaccaaatgtgtatggtacatcaggaccaattgcaggaggagttgtaaaccaaaacttccttgttgtgtt 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  9429 caaccatgaaagattacactttacctatgagaccaaatgtgtatggcacatcaggaccaattgcaggaggagttgtaaaccaaaactgccttgttgtgtt 9330  T
Q  201 cctaagtccaacctcataataatatttggtattgtactgtccaaaaagaagcacaaatatcaaaactgtgcatctggacgagaaacaacatacatgacaa 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||    
T  9329 cctaagtccaacctcataataatatttggtattgtactgtccaaaaagaagcacaaatatcaaaactttgcatctggaagagaaacaacatacatgacaa 9230  T
Q  301 gggagtaatggaataaagaagtaccttcaaattccttatagtggcatgatgaataaaaccagacgagtaattgaagtatctataagtttcaatttttcct 400  Q
    ||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  9229 gggagtaatggaataaagaagtaccttcaaattccttatagtaacatgatgaataaaaccagatgagtaattgaagtatctataagtttcaatttttcct 9130  T
Q  401 ttagcaagcttcttgtgcttgctgttctcactccagtaacgcactgcatccgacccgggttcatc 465  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9129 ttagcaagcttcttgtgcttgctgttctcactccagtaacgcactgcatccgacccgggttcatc 9065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 109; Significance: 1e-54; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 115 - 263
Target Start/End: Complemental strand, 13638265 - 13638117
Alignment:
Q  115 tacactttacctatgagaccaaatgtgtatggtacatcaggaccaattgcaggaggagttgtaaaccaaaacttccttgttgtgttcctaagtccaacct 214  Q
    |||| ||||||||| ||||||||||||||||| ||||||||||| ||| |||||||||||||||||||||||| ||||||||||||||  ||||||||||    
T  13638265 tacagtttacctattagaccaaatgtgtatggcacatcaggaccgatttcaggaggagttgtaaaccaaaactgccttgttgtgttcccgagtccaacct 13638166  T
Q  215 cataataatatttggtattgtactgtccaaaaagaagcacaaatatcaa 263  Q
    | ||||||||||||||||||||||||||||||||||||||||| |||||    
T  13638165 cgtaataatatttggtattgtactgtccaaaaagaagcacaaacatcaa 13638117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 304 - 465
Target Start/End: Complemental strand, 13638054 - 13637893
Alignment:
Q  304 agtaatggaataaagaagtaccttcaaattccttatagtggcatgatgaataaaaccagacgagtaattgaagtatctataagtttcaatttttccttta 403  Q
    |||||||||||||||||||||||  |||||||| ||||| |  ||||| ||||||||||| | |||||||||  ||||||||||  ||||||| ||||||    
T  13638054 agtaatggaataaagaagtacctctaaattcctaatagtagtgtgatggataaaaccagaagtgtaattgaaaaatctataagtaacaattttcccttta 13637955  T
Q  404 gcaagcttcttgtgcttgctgttctcactccagtaacgcactgcatccgacccgggttcatc 465  Q
    || ||| |||| ||||||||||||| |||||||||||||||||| | ||| || ||||||||    
T  13637954 gctagcctcttctgcttgctgttcttactccagtaacgcactgcgttcgagcctggttcatc 13637893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 37203267 - 37203221
Alignment:
Q  1 tgtccgtgtcgtgttcggtgtccgtttccatatccgtgcttcatagg 47  Q
    |||| ||||||||| |||||||||| |||||||||||||||||||||    
T  37203267 tgtctgtgtcgtgtccggtgtccgtgtccatatccgtgcttcatagg 37203221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 23293056 - 23293102
Alignment:
Q  1 tgtccgtgtcgtgttcggtgtccgtttccatatccgtgcttcatagg 47  Q
    |||||||||||||| |||||||||| ||| |||| ||||||||||||    
T  23293056 tgtccgtgtcgtgtccggtgtccgtgtccgtatctgtgcttcatagg 23293102  T

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Target: chr1 (Bit Score: 83; Significance: 4e-39; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 124 - 238
Target Start/End: Original strand, 50981301 - 50981415
Alignment:
Q  124 cctatgagaccaaatgtgtatggtacatcaggaccaattgcaggaggagttgtaaaccaaaacttccttgttgtgttcctaagtccaacctcataataat 223  Q
    ||||||||||||||||||||||| ||||||||||||||| ||||||||||| ||||||||||||  ||||||||||||| ||||||||||||||||||||    
T  50981301 cctatgagaccaaatgtgtatggcacatcaggaccaatttcaggaggagttataaaccaaaactgtcttgttgtgttcccaagtccaacctcataataat 50981400  T
Q  224 atttggtattgtact 238  Q
    |||| || |||||||    
T  50981401 atttagtgttgtact 50981415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 328 - 465
Target Start/End: Original strand, 50981417 - 50981557
Alignment:
Q  328 caaattccttatagtggcatgatgaataaaaccagacgagtaattgaagtatctataagtttcaatttttcctttagcaagcttcttgtgcttgctgttc 427  Q
    ||||||||||||||| |  ||||||||||||||||| |||||||||||| ||||||||||  ||||||| |||||||| |||||||| || ||||||||     
T  50981417 caaattccttatagtagtgtgatgaataaaaccagatgagtaattgaagaatctataagtaacaattttccctttagctagcttcttttgtttgctgttg 50981516  T
Q  428 tc---actccagtaacgcactgcatccgacccgggttcatc 465  Q
    ||   ||||||||| ||||||||   |||||| ||||||||    
T  50981517 tcagtactccagtagcgcactgcgatcgaccctggttcatc 50981557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 10577805 - 10577850
Alignment:
Q  1 tgtccgtgtcgtgttcggtgtccgtttccatatccgtgcttcatag 46  Q
    |||||||||||||| |||||||||| ||| ||||||||||||||||    
T  10577805 tgtccgtgtcgtgtccggtgtccgtgtccgtatccgtgcttcatag 10577850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 41597540 - 41597585
Alignment:
Q  1 tgtccgtgtcgtgttcggtgtccgtttccatatccgtgcttcatag 46  Q
    ||||||||||||||| ||||||||| ||| ||||||||||||||||    
T  41597540 tgtccgtgtcgtgtttggtgtccgtatccgtatccgtgcttcatag 41597585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 398835 - 398882
Alignment:
Q  1 tgtccgtgtcgtgttcggtgtccgtttccatatccgtgcttcatagga 48  Q
    |||||||||||||| |||||||||  ||| ||||||||||||||||||    
T  398835 tgtccgtgtcgtgtccggtgtccgcgtccgtatccgtgcttcatagga 398882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 22881680 - 22881727
Alignment:
Q  1 tgtccgtgtcgtgttcggtgtccgtttccatatccgtgcttcatagga 48  Q
    |||| ||||||||| |||||||||| || |||||||||||||||||||    
T  22881680 tgtcagtgtcgtgtccggtgtccgtgtctatatccgtgcttcatagga 22881727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 7 - 47
Target Start/End: Original strand, 10475047 - 10475087
Alignment:
Q  7 tgtcgtgttcggtgtccgtttccatatccgtgcttcatagg 47  Q
    |||||||| |||||||||| | |||||||||||||||||||    
T  10475047 tgtcgtgtccggtgtccgtgttcatatccgtgcttcatagg 10475087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 3 - 43
Target Start/End: Complemental strand, 26830582 - 26830542
Alignment:
Q  3 tccgtgtcgtgttcggtgtccgtttccatatccgtgcttca 43  Q
    |||||||||||| || ||||||| |||||||||||||||||    
T  26830582 tccgtgtcgtgtccgatgtccgtgtccatatccgtgcttca 26830542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 48040532 - 48040568
Alignment:
Q  1 tgtccgtgtcgtgttcggtgtccgtttccatatccgt 37  Q
    |||||||||||||| |||||||||| |||||||||||    
T  48040532 tgtccgtgtcgtgtccggtgtccgtatccatatccgt 48040568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000003; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 15796364 - 15796409
Alignment:
Q  1 tgtccgtgtcgtgttcggtgtccgtttccatatccgtgcttcatag 46  Q
    |||||||||||||| |||||||||| ||||||||||||||||||||    
T  15796364 tgtccgtgtcgtgtccggtgtccgtgtccatatccgtgcttcatag 15796409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 750689 - 750735
Alignment:
Q  1 tgtccgtgtcgtgttcggtgtccgtttccatatccgtgcttcatagg 47  Q
    |||||||||||||| |||||||||| ||| |||||||||||||||||    
T  750689 tgtccgtgtcgtgtccggtgtccgtgtccgtatccgtgcttcatagg 750735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 14028004 - 14027959
Alignment:
Q  1 tgtccgtgtcgtgttcggtgtccgtttccatatccgtgcttcatag 46  Q
    |||||||||||||| |||||||||| ||| ||||||||||||||||    
T  14028004 tgtccgtgtcgtgtccggtgtccgtgtccgtatccgtgcttcatag 14027959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 16000086 - 16000130
Alignment:
Q  1 tgtccgtgtcgtgttcggtgtccgtttccatatccgtgcttcata 45  Q
    |||| |||||||||||||||||||| ||| |||||||||||||||    
T  16000086 tgtctgtgtcgtgttcggtgtccgtgtccgtatccgtgcttcata 16000130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 39756231 - 39756185
Alignment:
Q  1 tgtccgtgtcgtgttcggtgtccgtttccatatccgtgcttcatagg 47  Q
    |||| ||||||||| || ||||||| |||||||||||||||||||||    
T  39756231 tgtcagtgtcgtgtccgatgtccgtatccatatccgtgcttcatagg 39756185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 3164095 - 3164140
Alignment:
Q  1 tgtccgtgtcgtgttcggtgtccgtttccatatccgtgcttcatag 46  Q
    |||||||||||||| |||||||||| ||  ||||||||||||||||    
T  3164095 tgtccgtgtcgtgtccggtgtccgtgtctgtatccgtgcttcatag 3164140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 10318110 - 10318155
Alignment:
Q  1 tgtccgtgtcgtgttcggtgtccgtttccatatccgtgcttcatag 46  Q
    |||||||||||||| |||||||||| | | ||||||||||||||||    
T  10318110 tgtccgtgtcgtgtccggtgtccgtgttcgtatccgtgcttcatag 10318155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 10335356 - 10335401
Alignment:
Q  1 tgtccgtgtcgtgttcggtgtccgtttccatatccgtgcttcatag 46  Q
    |||||||||||||| |||||||||| | | ||||||||||||||||    
T  10335356 tgtccgtgtcgtgtccggtgtccgtgttcgtatccgtgcttcatag 10335401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 14747556 - 14747511
Alignment:
Q  1 tgtccgtgtcgtgttcggtgtccgtttccatatccgtgcttcatag 46  Q
    |||| ||||||||| |||||||||| ||| ||||||||||||||||    
T  14747556 tgtcagtgtcgtgtccggtgtccgtatccgtatccgtgcttcatag 14747511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 3 - 47
Target Start/End: Original strand, 4991039 - 4991083
Alignment:
Q  3 tccgtgtcgtgttcggtgtccgtttccatatccgtgcttcatagg 47  Q
    ||||||||||||||||||||||| ||| ||| |||| ||||||||    
T  4991039 tccgtgtcgtgttcggtgtccgtgtccgtatacgtgtttcatagg 4991083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 3 - 47
Target Start/End: Complemental strand, 7171489 - 7171445
Alignment:
Q  3 tccgtgtcgtgttcggtgtccgtttccatatccgtgcttcatagg 47  Q
    |||||||||||| ||||||| || ||| |||||||||||||||||    
T  7171489 tccgtgtcgtgtccggtgtctgtgtccgtatccgtgcttcatagg 7171445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 1433443 - 1433397
Alignment:
Q  1 tgtccgtgtcgtgttcggtgtccgtttccatatccgtgcttcatagg 47  Q
    |||||||||||||||||||||||||  || |||||||||||||||||    
T  1433443 tgtccgtgtcgtgttcggtgtccgtgcccgtatccgtgcttcatagg 1433397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 9778497 - 9778452
Alignment:
Q  1 tgtccgtgtcgtgttcggtgtccgtttccatatccgtgcttcatag 46  Q
    |||||||||||||| |||||||||| ||| ||||||||||||||||    
T  9778497 tgtccgtgtcgtgtccggtgtccgtgtccgtatccgtgcttcatag 9778452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 3 - 47
Target Start/End: Complemental strand, 13300405 - 13300361
Alignment:
Q  3 tccgtgtcgtgttcggtgtccgtttccatatccgtgcttcatagg 47  Q
    ||||||||||||||||||||||| | ||||||| |||||||||||    
T  13300405 tccgtgtcgtgttcggtgtccgtgttcatatccctgcttcatagg 13300361  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 9408411 - 9408457
Alignment:
Q  1 tgtccgtgtcgtgttcggtgtccgtttccatatccgtgcttcatagg 47  Q
    |||||||||||| |||||||||||| ||| |||||||| ||||||||    
T  9408411 tgtccgtgtcgtattcggtgtccgtgtccgtatccgtgtttcatagg 9408457  T

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Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 2 - 44
Target Start/End: Original strand, 21141053 - 21141095
Alignment:
Q  2 gtccgtgtcgtgttcggtgtccgtttccatatccgtgcttcat 44  Q
    ||||||||||||| |||||||||| ||| ||||||||||||||    
T  21141053 gtccgtgtcgtgtacggtgtccgtgtccgtatccgtgcttcat 21141095  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 6770532 - 6770486
Alignment:
Q  1 tgtccgtgtcgtgttcggtgtccgtttccatatccgtgcttcatagg 47  Q
    |||||||||| |||||||||||||| ||| |||||||||||||||||    
T  6770532 tgtccgtgtcatgttcggtgtccgtatccgtatccgtgcttcatagg 6770486  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 15382466 - 15382420
Alignment:
Q  1 tgtccgtgtcgtgttcggtgtccgtttccatatccgtgcttcatagg 47  Q
    |||||||||||||| |||||||||| ||| |||||||||||||||||    
T  15382466 tgtccgtgtcgtgtccggtgtccgtgtccgtatccgtgcttcatagg 15382420  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 21522739 - 21522692
Alignment:
Q  1 tgtccgtgtcgtgttcggtgtccgtttccatatccgtgcttcatagga 48  Q
    |||||||||||||| ||||| |||| ||| ||||||||||||||||||    
T  21522739 tgtccgtgtcgtgtccggtgaccgtgtccgtatccgtgcttcatagga 21522692  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 21533305 - 21533258
Alignment:
Q  1 tgtccgtgtcgtgttcggtgtccgtttccatatccgtgcttcatagga 48  Q
    |||||||||||||| ||||| |||| ||| ||||||||||||||||||    
T  21533305 tgtccgtgtcgtgtccggtgaccgtgtccgtatccgtgcttcatagga 21533258  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 20683370 - 20683325
Alignment:
Q  1 tgtccgtgtcgtgttcggtgtccgtttccatatccgtgcttcatag 46  Q
    |||||||||||||| |||||||||| ||| ||||||||||| ||||    
T  20683370 tgtccgtgtcgtgtccggtgtccgtgtccgtatccgtgctttatag 20683325  T

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Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 23016061 - 23016106
Alignment:
Q  1 tgtccgtgtcgtgttcggtgtccgtttccatatccgtgcttcatag 46  Q
    |||||||||||||| ||| |||||| ||| ||||||||||||||||    
T  23016061 tgtccgtgtcgtgtccggagtccgtgtccgtatccgtgcttcatag 23016106  T

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Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 13287469 - 13287509
Alignment:
Q  1 tgtccgtgtcgtgttcggtgtccgtttccatatccgtgctt 41  Q
    |||||||||||||| |||||||||| ||| |||||||||||    
T  13287469 tgtccgtgtcgtgtccggtgtccgtgtccgtatccgtgctt 13287509  T

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Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 5 - 45
Target Start/End: Complemental strand, 28862302 - 28862262
Alignment:
Q  5 cgtgtcgtgttcggtgtccgtttccatatccgtgcttcata 45  Q
    |||||||||| || ||||||| |||||||||||||||||||    
T  28862302 cgtgtcgtgtccgatgtccgtgtccatatccgtgcttcata 28862262  T

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Target: scaffold0652 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0652
Description:

Target: scaffold0652; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 532 - 575
Alignment:
Q  1 tgtccgtgtcgtgttcggtgtccgtttccatatccgtgcttcat 44  Q
    |||||||| |||||||||||||||| ||| ||||||||||||||    
T  532 tgtccgtggcgtgttcggtgtccgtgtccgtatccgtgcttcat 575  T

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Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 3 - 46
Target Start/End: Original strand, 20785531 - 20785574
Alignment:
Q  3 tccgtgtcgtgttcggtgtccgtttccatatccgtgcttcatag 46  Q
    |||||||||||| |||||||||| ||| ||||||||||||||||    
T  20785531 tccgtgtcgtgtacggtgtccgtgtccgtatccgtgcttcatag 20785574  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 24413630 - 24413675
Alignment:
Q  1 tgtccgtgtcgtgttcggtgtccgtttccatatccgtgcttcatag 46  Q
    ||||||||||||||  ||||||||| ||| ||||||||||||||||    
T  24413630 tgtccgtgtcgtgtctggtgtccgtgtccgtatccgtgcttcatag 24413675  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 43737883 - 43737928
Alignment:
Q  1 tgtccgtgtcgtgttcggtgtccgtttccatatccgtgcttcatag 46  Q
    |||||||||||||| |||||||||| ||  ||||||||||||||||    
T  43737883 tgtccgtgtcgtgtccggtgtccgtgtctgtatccgtgcttcatag 43737928  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 926858 - 926902
Alignment:
Q  1 tgtccgtgtcgtgttcggtgtccgtttccatatccgtgcttcata 45  Q
    |||||||||||||| |||||||||| | | |||||||||||||||    
T  926858 tgtccgtgtcgtgtccggtgtccgtgttcgtatccgtgcttcata 926902  T

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Target: scaffold0116 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0116
Description:

Target: scaffold0116; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 9887 - 9841
Alignment:
Q  1 tgtccgtgtcgtgttcggtgtccgtttccatatccgtgcttcatagg 47  Q
    ||||| |||||||| |||||||||| ||| |||||||||||||||||    
T  9887 tgtccatgtcgtgtccggtgtccgtgtccgtatccgtgcttcatagg 9841  T

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Target: scaffold0053 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 8787 - 8741
Alignment:
Q  1 tgtccgtgtcgtgttcggtgtccgtttccatatccgtgcttcatagg 47  Q
    |||||||||||||| |||||||||| ||| ||||| |||||||||||    
T  8787 tgtccgtgtcgtgtccggtgtccgtgtccgtatccatgcttcatagg 8741  T

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Target: scaffold0027 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 46671 - 46625
Alignment:
Q  1 tgtccgtgtcgtgttcggtgtccgtttccatatccgtgcttcatagg 47  Q
    |||||||||||||| || ||||||| ||| |||||||||||||||||    
T  46671 tgtccgtgtcgtgtccgatgtccgtgtccgtatccgtgcttcatagg 46625  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 7938105 - 7938059
Alignment:
Q  1 tgtccgtgtcgtgttcggtgtccgtttccatatccgtgcttcatagg 47  Q
    ||||| |||||||| |||||||||| ||| |||||||||||||||||    
T  7938105 tgtccatgtcgtgtccggtgtccgtgtccgtatccgtgcttcatagg 7938059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 9107440 - 9107486
Alignment:
Q  1 tgtccgtgtcgtgttcggtgtccgtttccatatccgtgcttcatagg 47  Q
    |||||||||||||| |||||||||| ||  |||||||||||||||||    
T  9107440 tgtccgtgtcgtgtccggtgtccgtgtcagtatccgtgcttcatagg 9107486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 8777043 - 8777088
Alignment:
Q  1 tgtccgtgtcgtgttcggtgtccgtttccatatccgtgcttcatag 46  Q
    |||||||||||||| || ||||||| ||| ||||||||||||||||    
T  8777043 tgtccgtgtcgtgtccgttgtccgtgtccgtatccgtgcttcatag 8777088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 18367826 - 18367781
Alignment:
Q  1 tgtccgtgtcgtgttcggtgtccgtttccatatccgtgcttcatag 46  Q
    ||||| |||||||| |||||||||| ||| ||||||||||||||||    
T  18367826 tgtccatgtcgtgtccggtgtccgtgtccgtatccgtgcttcatag 18367781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 26769506 - 26769460
Alignment:
Q  1 tgtccgtgtcgtgttcggtgtccgtttccatatccgtgcttcatagg 47  Q
    |||| ||||||||| |||||||||| ||| |||||||||||||||||    
T  26769506 tgtctgtgtcgtgtccggtgtccgtgtccgtatccgtgcttcatagg 26769460  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 28412339 - 28412294
Alignment:
Q  1 tgtccgtgtcgtgttcggtgtccgtttccatatccgtgcttcatag 46  Q
    ||||||||||||||  ||||||||| ||||||| ||||||||||||    
T  28412339 tgtccgtgtcgtgtctggtgtccgtgtccatattcgtgcttcatag 28412294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0475 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0475
Description:

Target: scaffold0475; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 3 - 44
Target Start/End: Complemental strand, 3303 - 3262
Alignment:
Q  3 tccgtgtcgtgttcggtgtccgtttccatatccgtgcttcat 44  Q
    |||||||||||| |||||||||| || |||||||||||||||    
T  3303 tccgtgtcgtgtccggtgtccgtgtctatatccgtgcttcat 3262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0136 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0136
Description:

Target: scaffold0136; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 5 - 46
Target Start/End: Original strand, 3928 - 3969
Alignment:
Q  5 cgtgtcgtgttcggtgtccgtttccatatccgtgcttcatag 46  Q
    ||||||||||  ||||||||| ||||||||||||||||||||    
T  3928 cgtgtcgtgtctggtgtccgtgtccatatccgtgcttcatag 3969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 130471 - 130426
Alignment:
Q  1 tgtccgtgtcgtgttcggtgtccgtttccatatccgtgcttcatag 46  Q
    |||||||||||||| |||||||||| ||| ||||| ||||||||||    
T  130471 tgtccgtgtcgtgtccggtgtccgtgtccgtatccatgcttcatag 130426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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