View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11827_low_16 (Length: 466)

Name: NF11827_low_16
Description: NF11827
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11827_low_16
NF11827_low_16
[»] chr5 (5 HSPs)
chr5 (1-466)||(41886188-41886652)
chr5 (288-466)||(41900361-41900539)
chr5 (84-159)||(32268868-32268943)
chr5 (287-466)||(32268546-32268725)
chr5 (109-156)||(41900191-41900238)
[»] scaffold1155 (1 HSPs)
scaffold1155 (356-460)||(1821-1925)
[»] scaffold0345 (1 HSPs)
scaffold0345 (356-460)||(8291-8395)
[»] scaffold0105 (1 HSPs)
scaffold0105 (356-460)||(30584-30688)
[»] chr3 (3 HSPs)
chr3 (105-149)||(51120326-51120370)
chr3 (356-466)||(51763325-51763435)
chr3 (353-390)||(1657614-1657651)
[»] chr2 (1 HSPs)
chr2 (105-149)||(45244522-45244566)
[»] chr8 (3 HSPs)
chr8 (346-395)||(17635581-17635630)
chr8 (366-395)||(17642880-17642909)
chr8 (109-149)||(17642614-17642654)
[»] chr7 (1 HSPs)
chr7 (109-146)||(10616209-10616246)
[»] chr6 (3 HSPs)
chr6 (346-395)||(9412203-9412252)
chr6 (353-390)||(11935970-11936007)
chr6 (353-390)||(11947950-11947987)
[»] chr4 (5 HSPs)
chr4 (353-390)||(645194-645231)
chr4 (109-149)||(1488824-1488864)
chr4 (109-149)||(1537251-1537291)
chr4 (329-389)||(1545952-1546012)
chr4 (109-149)||(12120920-12120960)


Alignment Details
Target: chr5 (Bit Score: 426; Significance: 0; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 426; E-Value: 0
Query Start/End: Original strand, 1 - 466
Target Start/End: Original strand, 41886188 - 41886652
Alignment:
Q  1 ttatttgactggaagtccactatgaaaaggaaaagaagatctttcaaaccaactatggagtccactcaagcaagaagaagcaaaagaaaaacaatggttg 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  41886188 ttatttgactggaagtccactatgaaaaggaaaagaagatctttcaaaccaactatggagtccactcaagcaagaagaagcaaaagaaaaacaatgattg 41886287  T
Q  101 gtggtttctatttacctgatgagtgttgagaatgtgtcttcaaattcctgaaagacaaccatagttgcatgacatctttgtcagttgtctcgaaacaatt 200  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41886288 gtggtttctatttacctgatgagtgttgggaatgtgtcttcaaattcctgaaagacaaccatagttgcatgacatctttgtcagttgtctcgaaacaatt 41886387  T
Q  201 cttgtccatcaccaactgcatcagattctctctcacaatctgctatgatcaaagtcaaaccctcccttttcctcctcgtctactcagtagattcatcaat 300  Q
    |||||||||||||||| ||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  41886388 cttgtccatcaccaaccgcatcagattctctctcacaatctgctgtgatcaaagtc-aaccctcccttttcctcctcgtctactcagtagattcatcaat 41886486  T
Q  301 ctcacctctctcgacctttctagcttccgtggtaacctcagtaaacttctcggccaaatctctaattttccattgaaactcacatcactcaatctttcgt 400  Q
    ||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41886487 ctcacctctctcgacctttctagcttccgcggtaacctcagcaaacttctcggccaaatctctaattttccattgaaactcacatcactcaatctttcgt 41886586  T
Q  401 atcaacgtattattcccacaaatgggttgtgagtttttgccaaaaagattacaactttgacctctc 466  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||    
T  41886587 atcaacgtattattcccacaaatgggttgcgagtttttgccaaaaagattacaactttaacctctc 41886652  T

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Target: chr5; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 288 - 466
Target Start/End: Original strand, 41900361 - 41900539
Alignment:
Q  288 tagattcatcaatctcacctctctcgacctttctagcttccgtggtaacctcagtaaacttctcggccaaatctctaattttccattgaaactcacatca 387  Q
    |||||| | |||||||||||| ||| | || ||  |||||  |||||||||||  ||||||||  | ||||||||| |||||||||||||||||||||||    
T  41900361 tagatttaccaatctcacctccctcaatctctcgcgcttctatggtaacctcaacaaacttctttgtcaaatctctcattttccattgaaactcacatca 41900460  T
Q  388 ctcaatctttcgtatcaacgtattattcccacaaatgggttgtgagtttttgccaaaaagattacaactttgacctctc 466  Q
    ||||| || ||  | ||| |  | || ||| ||  ||||||  ||| |||| |||||||||||||||||||||||||||    
T  41900461 ctcaaactctcagaccaaagcgtcatccccgcatttgggtttcgagctttttccaaaaagattacaactttgacctctc 41900539  T

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Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 84 - 159
Target Start/End: Complemental strand, 32268943 - 32268868
Alignment:
Q  84 aagaaaaacaatggttggtggtttctatttacctgatgagtgttgagaatgtgtcttcaaattcctgaaagacaac 159  Q
    ||||||| ||||| ||  |||||  |||||||| ||||||||||| |||||||||||||||||| |||||||||||    
T  32268943 aagaaaatcaatgatttctggttcatatttaccagatgagtgttgggaatgtgtcttcaaattcttgaaagacaac 32268868  T

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Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 287 - 466
Target Start/End: Complemental strand, 32268725 - 32268546
Alignment:
Q  287 gtagattcatcaatctcacctctctcgacctttctagcttccgtggtaacctcagtaaacttctcggccaaatctctaattttccattgaaactcacatc 386  Q
    ||||||||| ||| |||||||| |||||||| ||  | |||   ||||| ||||  || |||||| | |||||||||  |||||||||||||||||| ||    
T  32268725 gtagattcaccaacctcacctccctcgacctctcgtgtttcaacggtaaactcaacaagcttctctgtcaaatctctcgttttccattgaaactcacgtc 32268626  T
Q  387 actcaatctttcgtatcaacgtattattcccacaaatgggttg-tgagtttttgccaaaaagattacaactttgacctctc 466  Q
    ||||||||| ||  |  || | || |||||||||| |||||||  || ||||| | || ||||||||||||||||||||||    
T  32268625 actcaatctctcaaacaaatgcatcattcccacaattgggttgcagacttttt-cgaagaagattacaactttgacctctc 32268546  T

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Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 109 - 156
Target Start/End: Original strand, 41900191 - 41900238
Alignment:
Q  109 tatttacctgatgagtgttgagaatgtgtcttcaaattcctgaaagac 156  Q
    |||||||| ||||||||||| |||||||||||||||||||| ||||||    
T  41900191 tatttaccagatgagtgttgggaatgtgtcttcaaattcctcaaagac 41900238  T

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Target: scaffold1155 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold1155
Description:

Target: scaffold1155; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 356 - 460
Target Start/End: Original strand, 1821 - 1925
Alignment:
Q  356 aaatctctaattttccattgaaactcacatcactcaatctttcgtatcaacgtattattcccacaaatgggttgtgagtttttgccaaaaagattacaac 455  Q
    ||||||||  ||| |||||||| ||||||||||||||||| || || ||||  || |||||| || |||||||| |||||||  || |||| ||||||||    
T  1821 aaatctctcgtttcccattgaacctcacatcactcaatctctcctaccaacccataattcccgcagatgggttgcgagttttatcccaaaatattacaac 1920  T
Q  456 tttga 460  Q
    |||||    
T  1921 tttga 1925  T

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Target: scaffold0345 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0345
Description:

Target: scaffold0345; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 356 - 460
Target Start/End: Complemental strand, 8395 - 8291
Alignment:
Q  356 aaatctctaattttccattgaaactcacatcactcaatctttcgtatcaacgtattattcccacaaatgggttgtgagtttttgccaaaaagattacaac 455  Q
    ||||||||  ||| |||||||| ||||||||||||||||| || || ||||  || |||||| || |||||||| |||||||  || |||| ||||||||    
T  8395 aaatctctcgtttcccattgaacctcacatcactcaatctctcctaccaacccataattcccgcagatgggttgcgagttttatcccaaaatattacaac 8296  T
Q  456 tttga 460  Q
    |||||    
T  8295 tttga 8291  T

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Target: scaffold0105 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0105
Description:

Target: scaffold0105; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 356 - 460
Target Start/End: Original strand, 30584 - 30688
Alignment:
Q  356 aaatctctaattttccattgaaactcacatcactcaatctttcgtatcaacgtattattcccacaaatgggttgtgagtttttgccaaaaagattacaac 455  Q
    ||||||||  ||| |||||||| ||||||||||||||||| || || ||||  || |||||| || |||||||| |||||||  || |||| ||||||||    
T  30584 aaatctctcgtttcccattgaacctcacatcactcaatctctcctaccaacccataattcccgcagatgggttgcgagttttatcccaaaatattacaac 30683  T
Q  456 tttga 460  Q
    |||||    
T  30684 tttga 30688  T

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Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 105 - 149
Target Start/End: Original strand, 51120326 - 51120370
Alignment:
Q  105 tttctatttacctgatgagtgttgagaatgtgtcttcaaattcct 149  Q
    |||||||||||||||||| ||||| ||||||||||||||||||||    
T  51120326 tttctatttacctgatgactgttgggaatgtgtcttcaaattcct 51120370  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 356 - 466
Target Start/End: Original strand, 51763325 - 51763435
Alignment:
Q  356 aaatctctaattttccattgaaactcacatcactcaatctttcgtatcaacgtattattcccacaaatgggttgtgagtttttgccaaaaagattacaac 455  Q
    ||||||||  ||| |||||||||||||||||||| ||||| ||  | || | ||   |||| |||||||||||| |||||||| |  |||||||||||||    
T  51763325 aaatctctcgtttcccattgaaactcacatcacttaatctctccaaacagcttacctttcctacaaatgggttgcgagttttttcacaaaagattacaac 51763424  T
Q  456 tttgacctctc 466  Q
    |||||| ||||    
T  51763425 tttgacatctc 51763435  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 353 - 390
Target Start/End: Complemental strand, 1657651 - 1657614
Alignment:
Q  353 gccaaatctctaattttccattgaaactcacatcactc 390  Q
    |||||||||||| ||||||||||| |||||||||||||    
T  1657651 gccaaatctctagttttccattgagactcacatcactc 1657614  T

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Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 105 - 149
Target Start/End: Original strand, 45244522 - 45244566
Alignment:
Q  105 tttctatttacctgatgagtgttgagaatgtgtcttcaaattcct 149  Q
    |||||||||||||||||||||||| ||||||||||| ||||||||    
T  45244522 tttctatttacctgatgagtgttgggaatgtgtcttgaaattcct 45244566  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 346 - 395
Target Start/End: Original strand, 17635581 - 17635630
Alignment:
Q  346 cttctcggccaaatctctaattttccattgaaactcacatcactcaatct 395  Q
    |||||| || ||||||||  ||||||||||||||||| ||||||||||||    
T  17635581 cttctctgcgaaatctctccttttccattgaaactcatatcactcaatct 17635630  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 366 - 395
Target Start/End: Original strand, 17642880 - 17642909
Alignment:
Q  366 ttttccattgaaactcacatcactcaatct 395  Q
    ||||||||||||||||||||||||||||||    
T  17642880 ttttccattgaaactcacatcactcaatct 17642909  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 109 - 149
Target Start/End: Original strand, 17642614 - 17642654
Alignment:
Q  109 tatttacctgatgagtgttgagaatgtgtcttcaaattcct 149  Q
    |||||||||||||||||||| || | |||||||||||||||    
T  17642614 tatttacctgatgagtgttgggagtctgtcttcaaattcct 17642654  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 109 - 146
Target Start/End: Complemental strand, 10616246 - 10616209
Alignment:
Q  109 tatttacctgatgagtgttgagaatgtgtcttcaaatt 146  Q
    |||||||||||||||||||| |||||| ||||||||||    
T  10616246 tatttacctgatgagtgttgggaatgtatcttcaaatt 10616209  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 346 - 395
Target Start/End: Complemental strand, 9412252 - 9412203
Alignment:
Q  346 cttctcggccaaatctctaattttccattgaaactcacatcactcaatct 395  Q
    |||||||| |||||||||  |||||||||||||||| ||||||| |||||    
T  9412252 cttctcggtcaaatctctcgttttccattgaaactctcatcacttaatct 9412203  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 353 - 390
Target Start/End: Original strand, 11935970 - 11936007
Alignment:
Q  353 gccaaatctctaattttccattgaaactcacatcactc 390  Q
    |||||||||||| ||||||||||| |||||||||||||    
T  11935970 gccaaatctctagttttccattgagactcacatcactc 11936007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 353 - 390
Target Start/End: Original strand, 11947950 - 11947987
Alignment:
Q  353 gccaaatctctaattttccattgaaactcacatcactc 390  Q
    |||||||||||| ||||||||||| |||||||||||||    
T  11947950 gccaaatctctagttttccattgagactcacatcactc 11947987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 353 - 390
Target Start/End: Complemental strand, 645231 - 645194
Alignment:
Q  353 gccaaatctctaattttccattgaaactcacatcactc 390  Q
    |||||||||||| ||||||||||| |||||||||||||    
T  645231 gccaaatctctagttttccattgagactcacatcactc 645194  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 109 - 149
Target Start/End: Original strand, 1488824 - 1488864
Alignment:
Q  109 tatttacctgatgagtgttgagaatgtgtcttcaaattcct 149  Q
    ||||||||||||||||| || ||||||||| ||||||||||    
T  1488824 tatttacctgatgagtgctgggaatgtgtcgtcaaattcct 1488864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 109 - 149
Target Start/End: Original strand, 1537251 - 1537291
Alignment:
Q  109 tatttacctgatgagtgttgagaatgtgtcttcaaattcct 149  Q
    |||||||||||||||||||| |||||||| |||| ||||||    
T  1537251 tatttacctgatgagtgttgggaatgtgtattcagattcct 1537291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 329 - 389
Target Start/End: Complemental strand, 1546012 - 1545952
Alignment:
Q  329 gtggtaacctcagtaaacttctcggccaaatctctaattttccattgaaactcacatcact 389  Q
    ||||| ||||||  || ||||||  ||||||||||| ||||||||||||||||||| ||||    
T  1546012 gtggtgacctcaacaagcttctctaccaaatctctacttttccattgaaactcacaacact 1545952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 109 - 149
Target Start/End: Original strand, 12120920 - 12120960
Alignment:
Q  109 tatttacctgatgagtgttgagaatgtgtcttcaaattcct 149  Q
    |||||||||||||||||||| ||||||||| ||| ||||||    
T  12120920 tatttacctgatgagtgttgggaatgtgtcatcagattcct 12120960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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