View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11827_low_18 (Length: 461)
Name: NF11827_low_18
Description: NF11827
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11827_low_18 |
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Alignment Details
Target: chr1 (Bit Score: 422; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 422; E-Value: 0
Query Start/End: Original strand, 19 - 456
Target Start/End: Original strand, 37425601 - 37426038
Alignment:
| Q |
19 |
tcatagtcggataatttctgcgacaaggtccttgtgattgatatgggaatcaaagatagtaccaacatgccatttgcagcaagaagaaagcccatcactg |
118 |
Q |
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| T |
37425601 |
tcatagtcggataatttctgcgacaaggtcctcgtgattgatatgggaatcaaagatagtaccaacatgccatttgcagcaagaagaaagcccatcactg |
37425700 |
T |
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| Q |
119 |
caccaaagcaaaaagcaacaacagaagcctgaagggatagaggttagagcaccaagccagaagggaaacgggaaacagtactaaagatggcattagcatg |
218 |
Q |
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| T |
37425701 |
caccaaagcaaaaagcaacaacagaagcctgaagggatagaggttagagcaccaagccagaagggaaacgggaaacagtactaaagatggcattagcatg |
37425800 |
T |
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| Q |
219 |
agcaccaagccattcatgagcccagaaagaggaaaattattgcaccaaatacacccacgaagatagccatgtacttatacgtacttggtaaacagaaatg |
318 |
Q |
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| T |
37425801 |
agcaccaagccattcatgagcccagaaagaggaaaattattgcaccaaatacacccatgaagatagtcatgtacttatacgtacttggtaaacagaaatg |
37425900 |
T |
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| Q |
319 |
aagcagctcctagaaacatatcgaaagagaccaagtgttagtttgcaggtagcctgggaagggaagagatttccaaagcacggttagaatgctggatttc |
418 |
Q |
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| T |
37425901 |
aagcagctcctagaaacatatcgaaagagaccaagtgttagtttgcaggtagcctgggaagggaagagatttccaaagcacggttagaatgctggatttc |
37426000 |
T |
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| Q |
419 |
agcacacttcgtcagccggaacaccattctctgcttct |
456 |
Q |
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| T |
37426001 |
agcacacttcgtcagccggaacaccattctctgattct |
37426038 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 55 - 145
Target Start/End: Original strand, 37428136 - 37428226
Alignment:
| Q |
55 |
attgatatgggaatcaaagatagtaccaacatgccatttgcagcaagaagaaagcccatcactgcaccaaagcaaaaagcaacaacagaag |
145 |
Q |
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| T |
37428136 |
attgatatgggaatcaaagatagcaataacaggccatttgcagcaagaagaaagcccttcactgcaccagagcgaaaagcaacagcagaag |
37428226 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 90 - 148
Target Start/End: Original strand, 37433197 - 37433255
Alignment:
| Q |
90 |
atttgcagcaagaagaaagcccatcactgcaccaaagcaaaaagcaacaacagaagcct |
148 |
Q |
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| T |
37433197 |
atttgcagcaagaagaaagcccatcactgcaccagagggaaaagcaacagcggaagcct |
37433255 |
T |
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