View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11827_low_19 (Length: 457)
Name: NF11827_low_19
Description: NF11827
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11827_low_19 |
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Alignment Details
Target: chr5 (Bit Score: 278; Significance: 1e-155; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 18 - 443
Target Start/End: Original strand, 33675638 - 33676067
Alignment:
| Q |
18 |
agtaatggatggacgtgagtgtgcctgcatggctgtatgcttt-ggttggaggggtccgggtcgattttcgatcactgttgaacaaagtgcaaggacagt |
116 |
Q |
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| T |
33675638 |
agtaatggatggacgtgagtgtgcctgcatggctgcatgcttttggttggaggg-tccgggtcgattttcgatcactgttgaacaaagtgcaaggacagt |
33675736 |
T |
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| Q |
117 |
tggataaatgtcactcactcatcatatgattgacatgtaggaaatagaaattacgaacacgtgaaccaatataaggaaagggagttaatattattagagt |
216 |
Q |
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| T |
33675737 |
tggataaatgtcactcactcatcacatgattgacgtgtaagaaatagaaattacgaacacgtgaaccaatataaggaaa-ggagttaatattatttgggt |
33675835 |
T |
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| Q |
217 |
cgtgttaacaagtacccgaagtacattatttaacgaatatttaaaataaaattttgtctttaaaatataaattaaagtcataattacatgattttgtgtg |
316 |
Q |
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| T |
33675836 |
cgtgttaacaaatatctaaagtacattgtttaacgaatatttaaaataaaactttgtcttcaaaatataaatcaaagttataattacatgattttgtgtg |
33675935 |
T |
|
| Q |
317 |
taaaaattgttttatttaaattcttaaacaatg-ccttatgatatttagtaaca----nnnnnnnattattttaaggatcttgctaatcaatatataaag |
411 |
Q |
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|||||||| |||||||| ||| ||||||||||| ||||||||||||| |||||| |||||||||||||||||||||| |||||| ||||| |
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| T |
33675936 |
taaaaattattttatttgaatccttaaacaatgtccttatgatatttggtaacattttttttattattattttaaggatcttgctaaccaatatgtaaag |
33676035 |
T |
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| Q |
412 |
atattgattaaggattcctttaacaattgttc |
443 |
Q |
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| T |
33676036 |
atattgattaaggattcctttaacaattgttc |
33676067 |
T |
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