View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11827_low_20 (Length: 456)
Name: NF11827_low_20
Description: NF11827
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11827_low_20 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 378; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 1 - 446
Target Start/End: Complemental strand, 36673232 - 36672782
Alignment:
| Q |
1 |
aatttcttatgggattgaatgatcggtatcaaggtgttaggtcacaagttctattgatgggacaggttccaatcattaaaaaagtccacttaggttttag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36673232 |
aatttcttatgggattgaatgatcggtatcaaggtgttaggtcacaagttctattgatgggacaggttccaatcattaaaaaagtccacttaggttttag |
36673133 |
T |
|
| Q |
101 |
atgttggtttagttgtgccaaattggctccttgacactctgtttggattcatcttcatgtttaactcttataattagtcatttaagtgtatgtatgatga |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36673132 |
atgttggtttagttgtgccaaattggctccttgacactctgtttggattcatcttcatgtttaactcttataattagtcatttaagtgtatgtatgatga |
36673033 |
T |
|
| Q |
201 |
tactataa----tttatgagcattgctatatctcacgacaaaattcttcaagaaattttcccgaatcactaaataccaaacaatcttcaattattagatt |
296 |
Q |
| |
|
|||||||| ||||||||||||||||||| |||| |||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||| |
|
|
| T |
36673032 |
tactataaactgtttatgagcattgctatatgtcacaacaaaattcttcaagaaattttcccgaatcaccaaatatcaaacaatcttcaattattagatt |
36672933 |
T |
|
| Q |
297 |
actattaaacttaaaagggaaatgctaaccggtacccc-ggggctaagtaagcttctcccacactatccacgtttattttaattgtatgtgtagaaaatc |
395 |
Q |
| |
|
||||||||| |||||||||||||| |||| ||| |||| || ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| | |
|
|
| T |
36672932 |
actattaaatttaaaagggaaatgttaactggtgcccctggagctaagtaagcttctcccacactatccacatttattttaattgtatgtgtagaaaacc |
36672833 |
T |
|
| Q |
396 |
tagatgccacctcctactatgtattgggacaccaaaaatgcctaacctttg |
446 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
36672832 |
tagatgccacctcctactatgtattgggacatcaaaaatgcctaacctttg |
36672782 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 147; Significance: 2e-77; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 213 - 446
Target Start/End: Original strand, 53799930 - 53800152
Alignment:
| Q |
213 |
tgagcattgctatatctcacgacaaaattcttcaagaaattttcccgaatcactaaataccaaacaatcttcaattattagattactattaaacttaaaa |
312 |
Q |
| |
|
||||||||||||||| |||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53799930 |
tgagcattgctatatgtcacgacaaaattctttaagaaattttcccgaatcaccaaataccaaacaatcttcaattattagattactattaaacttaaaa |
53800029 |
T |
|
| Q |
313 |
gggaaatgctaaccggtaccccggggctaagtaagcttctcccacactatccacgtttattttaattgtatgtgtagaaaatctagatgccacctcctac |
412 |
Q |
| |
|
|| | ||| | ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
53800030 |
t--------tagtc---accacatagctaagtaagcttctcccacactatccacgtttattttaatcgtatgtgtagaaaatctagatgccacctcctac |
53800118 |
T |
|
| Q |
413 |
tatgtattgggacaccaaaaatgcctaacctttg |
446 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
53800119 |
tatgtattgggacaccaaaaatgcctaacctttg |
53800152 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 58; Significance: 3e-24; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 219 - 312
Target Start/End: Original strand, 32891375 - 32891468
Alignment:
| Q |
219 |
ttgctatatctcacgacaaaattcttcaagaaattttcccgaatcactaaataccaaacaatcttcaattattagattactattaaacttaaaa |
312 |
Q |
| |
|
||||||||| |||| |||||||||||||||||| ||| ||||||||| ||||| || | ||||||||||||||| ||||||||||||||||||| |
|
|
| T |
32891375 |
ttgctatatatcacaacaaaattcttcaagaaaattttccgaatcaccaaatatcatataatcttcaattattaaattactattaaacttaaaa |
32891468 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 374 - 437
Target Start/End: Original strand, 32891659 - 32891724
Alignment:
| Q |
374 |
ttaattgtatgtgtagaaaatctagatgccacctcctacta--tgtattgggacaccaaaaatgcc |
437 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||| |||||||||| | |||||||||| |
|
|
| T |
32891659 |
ttaattgtttgtgtagaaaatctagatgccacctcctactatgtgtattgggaaaacaaaaatgcc |
32891724 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 52; Significance: 1e-20; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 339 - 446
Target Start/End: Complemental strand, 31841977 - 31841870
Alignment:
| Q |
339 |
ctaagtaagcttctcccacactatccacgtttattttaattgtatgtgtagaaaatctagatgccacctcctactatgtattgggacaccaaaaatgcct |
438 |
Q |
| |
|
||||||||| |||| ||| ||||||||| ||| ||||||| || || ||||||||||||||||||||||||||||||||||| || | |||||||||| |
|
|
| T |
31841977 |
ctaagtaagattcttccatactatccacttttgttttaatcgtttgcgtagaaaatctagatgccacctcctactatgtattaggcaaacaaaaatgccc |
31841878 |
T |
|
| Q |
439 |
aacctttg |
446 |
Q |
| |
|
||| |||| |
|
|
| T |
31841877 |
aacttttg |
31841870 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 215 - 312
Target Start/End: Complemental strand, 31842091 - 31841993
Alignment:
| Q |
215 |
agcattgctatatctcacgacaaaattcttcaagaaattttcccgaatcactaaa-taccaaacaatcttcaattattagattactattaaacttaaaa |
312 |
Q |
| |
|
||||||||||||| | || ||||||||| |||||||| || || ||||||| ||| || | | ||||||||||||||| ||||||||||||||||||| |
|
|
| T |
31842091 |
agcattgctatatataacaacaaaattcatcaagaaaattgcctgaatcaccaaaatatgacataatcttcaattattaaattactattaaacttaaaa |
31841993 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 23807166 - 23807107
Alignment:
| Q |
1 |
aatttcttatgggattgaatgatcggtatcaaggtgttaggtcacaagttctattgatgg |
60 |
Q |
| |
|
|||| ||||||||||||||||||| ||||||||||||||||| | |||||| |||||||| |
|
|
| T |
23807166 |
aattccttatgggattgaatgatcagtatcaaggtgttaggttataagttccattgatgg |
23807107 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University