View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11827_low_21 (Length: 453)
Name: NF11827_low_21
Description: NF11827
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11827_low_21 |
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Alignment Details
Target: chr3 (Bit Score: 405; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 1 - 440
Target Start/End: Complemental strand, 52205799 - 52205357
Alignment:
| Q |
1 |
aatacttaattaagaggcaactccattcttaaaataactaaaacatgtttacttgaaattgcttagtagaatgggataaaggtaagcttacacgaagctc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
52205799 |
aatacttaattaagaggcaactccattcttaaaataactaaaacatgtttacttgaaattgcttagtagaatgggataaaggcaagcttacacgaagctc |
52205700 |
T |
|
| Q |
101 |
cgctttaacaaaaccaaccacaatcaagtgccaacttcaagccataagaaactcccaagatctcagcaacataagtactagaccgactaaaaaa---cta |
197 |
Q |
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| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| ||| |
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| T |
52205699 |
cactttaacaaaaccaaccacaatcaagtgccaacttcaagccataagaaactctcaagagctcagcaacataagtactagaccgactaaaaaaaaacta |
52205600 |
T |
|
| Q |
198 |
cgagaaattacacaagcagttgtcatctttcttacgaatcacatcaccataagttccgcctttaatactagctttgtctgtatttaaacgaatccaaccc |
297 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52205599 |
cgagaaattacacaagcagttgtcatctttcttacgaatcacatcaccataagttccgcctttaatactagctttgtctgtatttaaacgaatccaaccc |
52205500 |
T |
|
| Q |
298 |
accttcaaggcttgcaactaaatattaggaagagagttgtttggataatagtacaaaactacgcaccacactggcatgttgataaaaacataacatacct |
397 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52205499 |
accttgaaggcttgcaactaaatattaggaagagagttgtttggataatagtacaaaactacgcaccacactggcatgttgataaaaacataacatacct |
52205400 |
T |
|
| Q |
398 |
ccaaggtaaaagaggcctagcaaaaatttctccatgtacctct |
440 |
Q |
| |
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| ||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
52205399 |
caaaggtaaaagaggcctagcaaaaatttctccatgtacctct |
52205357 |
T |
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