View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11827_low_3 (Length: 908)

Name: NF11827_low_3
Description: NF11827
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11827_low_3
NF11827_low_3
[»] chr7 (4 HSPs)
chr7 (9-545)||(42029676-42030212)
chr7 (575-777)||(42030237-42030449)
chr7 (203-276)||(10325121-10325194)
chr7 (307-380)||(712131-712204)
[»] chr1 (1 HSPs)
chr1 (196-298)||(51080720-51080822)
[»] chr2 (1 HSPs)
chr2 (196-298)||(40287065-40287167)
[»] chr3 (3 HSPs)
chr3 (203-259)||(38998907-38998963)
chr3 (203-250)||(27265807-27265854)
chr3 (196-248)||(36684916-36684968)
[»] chr6 (2 HSPs)
chr6 (203-250)||(13757556-13757603)
chr6 (203-250)||(19047096-19047143)
[»] chr5 (1 HSPs)
chr5 (196-250)||(14856970-14857024)
[»] chr8 (1 HSPs)
chr8 (206-251)||(14541224-14541269)
[»] chr4 (1 HSPs)
chr4 (207-250)||(2087389-2087432)


Alignment Details
Target: chr7 (Bit Score: 452; Significance: 0; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 452; E-Value: 0
Query Start/End: Original strand, 9 - 545
Target Start/End: Original strand, 42029676 - 42030212
Alignment:
Q  9 caaaggagaaaaaatttaggttggaattggatggatgaggtgttcatcaatcttttgtctaaaaataaacgatttgannnnnnngttgagggaagcaact 108  Q
    |||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||    
T  42029676 caaaagagaaaaagtttaggttggaattggatggatgaggtgttcatcaatcttttgtctaaaaataaacgatttgacttttttgttgagggaagcaact 42029775  T
Q  109 caatgcatttaagtgggactagcattatatgggaccaaatacatgaaggaacatcatcataaaaaattatatgggactagctgtatcaattcacgagcga 208  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||| | |||||||| ||| ||||||| |||||| | ||||||||||||||||||    
T  42029776 caatgcatttaagtgggaccagcattatatgggaccaaatacatgaaggtatatcatcatcaaacattatataggactaaccgtatcaattcacgagcga 42029875  T
Q  209 ccccattagtttgcctcatattaaactcaacatgagagtttttgaaactattaaggaacatttgtctatatgcagaaataatacaaccaaatgagtctac 308  Q
    |||||||| |||||||||||||||| ||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||    
T  42029876 ccccattaatttgcctcatattaaattcaacatgagagtttttgaaactattatggaacatctgtctatatgcagaaataatacaaccaaatgagtctac 42029975  T
Q  309 aacattcttaaagtcgagagcaaaatccaaattataaagttgaaggtctaatgttcatttcaaagtcgtatgcaaaccaaatgcttccgttatttcatca 408  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42029976 aacattcttaaagtcgagagcaaaatccaaattataaagttgaaggtctaatgttcatttcaaagtcgtatgcaaaccaaatgcttccgttatttcatca 42030075  T
Q  409 tcacatacacagaggagaaaaccaagtatctcaattcctactatgttaagtgaaaaagaaaatgacttataacgtccgattgctggcttttctcatgaca 508  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42030076 tcacatacatagaggagaaaaccaagtatctcaattcctactatgttaagtgaaaaagaaaatgacttataacgtccgattgctggcttttctcatgaca 42030175  T
Q  509 aacaatgcatacatacctattgtccaccagaatgcaa 545  Q
    | |||||||||||||||||||||||||||||||||||    
T  42030176 accaatgcatacatacctattgtccaccagaatgcaa 42030212  T

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Target: chr7; HSP #2
Raw Score: 166; E-Value: 2e-88
Query Start/End: Original strand, 575 - 777
Target Start/End: Original strand, 42030237 - 42030449
Alignment:
Q  575 taggttctaaaataaattacacagtacataaaaattgatctcacgccacttaaaccaacccccttgttgtc----------acgccagattacatatatg 664  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||          |||||||||||||||||||    
T  42030237 tagggtctaaaataaattacacagtacataaaaattgatctcacgccacttaacccaacccccttgttgtccacgcggaccacgccagattacatatatg 42030336  T
Q  665 gtaacgctcttaccccttgtccacgccaccttatattacgctcataaaccctttgtctgtcatcaataacacaaaaccctcttcacttttcttctctcac 764  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  42030337 gtaacgctcttaccccttgtccacgccaccttatattacgctcataaaccctttgtctgtcatcaatatcacaaaaccctcttcacttttcttctctcac 42030436  T
Q  765 tatacatatacta 777  Q
    |||||||||||||    
T  42030437 tatacatatacta 42030449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 203 - 276
Target Start/End: Original strand, 10325121 - 10325194
Alignment:
Q  203 gagcgaccccattagtttgcctcatattaaactcaacatgagagtttttgaaactattaaggaacatttgtcta 276  Q
    |||||||| |||| ||||||||| |||||||||| ||||||||||| || |||| |||||| |||| |||||||    
T  10325121 gagcgacctcattcgtttgcctcctattaaactcgacatgagagttgtttaaacaattaagtaacaattgtcta 10325194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 307 - 380
Target Start/End: Complemental strand, 712204 - 712131
Alignment:
Q  307 acaacattcttaaagtcgagagcaaaatccaaattataaagttgaaggtctaatgttcatttcaaagtcgtatg 380  Q
    ||||| |||||| |||| ||||||||||| | ||||| || |||||||| | |||| |||| ||||||||||||    
T  712204 acaaccttcttagagtctagagcaaaatctacattatcaaattgaaggtatgatgtccattccaaagtcgtatg 712131  T

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Target: chr1 (Bit Score: 47; Significance: 2e-17; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 196 - 298
Target Start/End: Original strand, 51080720 - 51080822
Alignment:
Q  196 aattcacgagcgaccccattagtttgcctcatattaaactcaacatgagagtttttgaaactattaaggaacatttgtctatatgcagaaataatacaac 295  Q
    |||||| ||||||||||||||| ||||||| |||||||||| |||||||||||||  |||||||   | ||||  |||||| |||||| |||||||||||    
T  51080720 aattcatgagcgaccccattagattgcctcctattaaactcgacatgagagttttgaaaactatcctgaaacaactgtctacatgcagtaataatacaac 51080819  T
Q  296 caa 298  Q
    |||    
T  51080820 caa 51080822  T

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Target: chr2 (Bit Score: 43; Significance: 0.000000000000006; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 196 - 298
Target Start/End: Original strand, 40287065 - 40287167
Alignment:
Q  196 aattcacgagcgaccccattagtttgcctcatattaaactcaacatgagagtttttgaaactattaaggaacatttgtctatatgcagaaataatacaac 295  Q
    |||||| ||| ||||||||||| |||||||||||||||||  |||||||||||||  |||||||   | ||||  |||||| |||||| |||||||||||    
T  40287065 aattcatgagtgaccccattagcttgcctcatattaaacttgacatgagagttttgaaaactatcctgaaacaactgtctacatgcagtaataatacaac 40287164  T
Q  296 caa 298  Q
    |||    
T  40287165 caa 40287167  T

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Target: chr3 (Bit Score: 37; Significance: 0.00000000002; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 203 - 259
Target Start/End: Complemental strand, 38998963 - 38998907
Alignment:
Q  203 gagcgaccccattagtttgcctcatattaaactcaacatgagagtttttgaaactat 259  Q
    ||||||||||||||| ||||||| |||||||||| |||||||||||||  |||||||    
T  38998963 gagcgaccccattagcttgcctcctattaaactcgacatgagagttttgaaaactat 38998907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 203 - 250
Target Start/End: Complemental strand, 27265854 - 27265807
Alignment:
Q  203 gagcgaccccattagtttgcctcatattaaactcaacatgagagtttt 250  Q
    |||||||| |||||||||| ||| ||||||||||||||||||||||||    
T  27265854 gagcgacctcattagtttgtctcttattaaactcaacatgagagtttt 27265807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 196 - 248
Target Start/End: Complemental strand, 36684968 - 36684916
Alignment:
Q  196 aattcacgagcgaccccattagtttgcctcatattaaactcaacatgagagtt 248  Q
    |||||| ||||||||||||||| ||||||| |||| ||||| |||||||||||    
T  36684968 aattcatgagcgaccccattagcttgcctcctattgaactcgacatgagagtt 36684916  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000009; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 203 - 250
Target Start/End: Original strand, 13757556 - 13757603
Alignment:
Q  203 gagcgaccccattagtttgcctcatattaaactcaacatgagagtttt 250  Q
    |||||||| ||||||||||| || ||||||||||||||||||||||||    
T  13757556 gagcgacctcattagtttgcttcttattaaactcaacatgagagtttt 13757603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 203 - 250
Target Start/End: Complemental strand, 19047143 - 19047096
Alignment:
Q  203 gagcgaccccattagtttgcctcatattaaactcaacatgagagtttt 250  Q
    |||||||| |||||| ||||||| |||||||||| |||||||||||||    
T  19047143 gagcgaccacattagcttgcctcctattaaactcgacatgagagtttt 19047096  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 196 - 250
Target Start/End: Original strand, 14856970 - 14857024
Alignment:
Q  196 aattcacgagcgaccccattagtttgcctcatattaaactcaacatgagagtttt 250  Q
    |||||| |||||| | |||| |||||||||||||||||||| |||||||||||||    
T  14856970 aattcatgagcgatcacatttgtttgcctcatattaaactcgacatgagagtttt 14857024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 206 - 251
Target Start/End: Complemental strand, 14541269 - 14541224
Alignment:
Q  206 cgaccccattagtttgcctcatattaaactcaacatgagagttttt 251  Q
    ||||| ||||||||||||||||||||||||||| | ||||||||||    
T  14541269 cgaccacattagtttgcctcatattaaactcaatacgagagttttt 14541224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 207 - 250
Target Start/End: Original strand, 2087389 - 2087432
Alignment:
Q  207 gaccccattagtttgcctcatattaaactcaacatgagagtttt 250  Q
    ||||||||||||||||||| ||||||| | ||||||||||||||    
T  2087389 gaccccattagtttgcctcgtattaaatttaacatgagagtttt 2087432  T

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