View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11827_low_30 (Length: 373)
Name: NF11827_low_30
Description: NF11827
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11827_low_30 |
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| [»] chr6 (5 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 255; Significance: 1e-142; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 107 - 373
Target Start/End: Original strand, 1890474 - 1890740
Alignment:
| Q |
107 |
agcaaagtacaatgggagtatataaacagtttcttaaataatataccaacttttaatacaaccaaccaacttttatctttcatttcagtttatggtccaa |
206 |
Q |
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| T |
1890474 |
agcaaagtacaatgggagtatataaacagtttcttaaataatataccaacttttaatacaaccaaccaacttttatctttcatttcagtttatggtccaa |
1890573 |
T |
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| Q |
207 |
acctcatcatgaaaaacatctcacagaaattctgaacttcagcagaatttgtgattgttgtgtaactgatagaacttagaagtcagagaaaatatgacaa |
306 |
Q |
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| T |
1890574 |
acctcatcatgaaaaacatctcatagaaattctgaacttcagcagaatttgtgattgttgtgtaactgatagaacttagaagtcagagaaaatatgagaa |
1890673 |
T |
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| Q |
307 |
gaagatggtcattttacaaggatgttttgccacctgtggtgatcataggacaggaaactattgaaat |
373 |
Q |
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| T |
1890674 |
gaagatggtccttttacaaggatgttttgccacctgtggtgatcataggacaggaaactattgaaat |
1890740 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 300 - 373
Target Start/End: Original strand, 1895517 - 1895590
Alignment:
| Q |
300 |
atgacaagaagatggtcattttacaaggatgttttgccacctgtggtgatcataggacaggaaactattgaaat |
373 |
Q |
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| T |
1895517 |
atgacaagaagatggtccttttacatggatgttttgccaattttagtgatcataggacaggaaactattgaaat |
1895590 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 254 - 342
Target Start/End: Original strand, 1910928 - 1911015
Alignment:
| Q |
254 |
tttgtgattgttgtgtaactgatagaacttagaagtcagagaaaatatgacaagaagatggtcattttacaaggatgttttgccacctg |
342 |
Q |
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| T |
1910928 |
tttgtgattgttgtgtaactgaaagaacatagaagtgacag-aaacatgacaagaagatggtccttgtacatggatgttctgccacctg |
1911015 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 300 - 355
Target Start/End: Original strand, 1901928 - 1901983
Alignment:
| Q |
300 |
atgacaagaagatggtcattttacaaggatgttttgccacctgtggtgatcatagg |
355 |
Q |
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| T |
1901928 |
atgacaagaagatggtcactttacatggatgttttgccacctgtggtgattatagg |
1901983 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 235 - 355
Target Start/End: Original strand, 1883959 - 1884078
Alignment:
| Q |
235 |
attctgaacttcagcagaatttgtgattgttgtgtaactgatagaacttagaagtcagagaaaatatgacaagaagatggtcattttacaaggatgtttt |
334 |
Q |
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| T |
1883959 |
attctgaacttcaacaaggtttgtgattgttgtatataggataaaacttagaacacatag-aaagatgacaagaaaacggtccttttacatggattttct |
1884057 |
T |
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| Q |
335 |
gccacctgtggtgatcatagg |
355 |
Q |
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| T |
1884058 |
gccacctgttgtgattatagg |
1884078 |
T |
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