View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11827_low_31 (Length: 365)
Name: NF11827_low_31
Description: NF11827
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11827_low_31 |
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Alignment Details
Target: chr4 (Bit Score: 262; Significance: 1e-146; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 7 - 333
Target Start/End: Complemental strand, 17371225 - 17370901
Alignment:
| Q |
7 |
agtgagatgaatggaacaaatcgaaacttgtgtgttgtatatgcacaaatcaaaactgaaaaaatgagggtgtagaaatcggaacagtgtgagaagaacg |
106 |
Q |
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| T |
17371225 |
agtgagatgaatggaacaaatagaaacttgtgtgttgtatatgcacaaatcgaaactgaaaaa-tgagggtgtagaaatcggaacaatgtgagaagaacg |
17371127 |
T |
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| Q |
107 |
atgaaaaaacgagagggattggaacaaagaaattggaaccgtgtgagaagagatgggaacagtgggttttgattcttttgttgcactgattctaaatttt |
206 |
Q |
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| T |
17371126 |
atgaaaaa-cgagagggattggaacaaagaaattggaaccgtgtgagaagagatcggaatagtgggttttgattcttttgttgcactaattctaaatttt |
17371028 |
T |
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| Q |
207 |
caatctttgctttcaactcattgatgtaatccattggatctcaaggatttgtgtttgggnnnnnnnctattcatttttctgaaaaaatattgtatgggtt |
306 |
Q |
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| T |
17371027 |
caatctttgctttcaactcattgatgtaatccattgggtctcaaggatttgtgtttgggtttttttctattcatttttctgaaaaaatattgtatgggtt |
17370928 |
T |
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| Q |
307 |
tgtatttaggtttttggaggaatttga |
333 |
Q |
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| T |
17370927 |
tgtatttaggtttttggaggaatttga |
17370901 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 262; Significance: 1e-146; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 7 - 341
Target Start/End: Complemental strand, 24748975 - 24748643
Alignment:
| Q |
7 |
agtgagatgaatggaacaaatcgaaacttgtgtgttgtatatgcacaaatcaaaactgaaaaaatgagggtgtagaaatcggaacagtgtgagaagaacg |
106 |
Q |
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| T |
24748975 |
agtgagatgaatggaacaaatcgaaacttgtgtgttgtatatgcacaaatcgtaactgaaaaa-tgagggtgtaaaaatcggaatagtgtgagaagaacg |
24748877 |
T |
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| Q |
107 |
atgaaaaaacgagagggattggaacaaagaaattggaaccgtgtgagaagagatgggaacagtgggttttgattcttttgttgcactgattctaaatttt |
206 |
Q |
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| T |
24748876 |
atgaaaaaacgagagggattggaacaaagaaattggaaccgtgtgagaagagatcagaacagtgggttttgattcttttgttgcactgattctaaatttt |
24748777 |
T |
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| Q |
207 |
caatctttgctttcaactcattgatgtaatccattggatctcaaggatttgtgtttgggnnnnnnnctattcatttttctgaaaaaatattgtatgggtt |
306 |
Q |
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| T |
24748776 |
caatctttgctttcaactcatagatgtaatcctttggatctcaaggatttgtgtttgggttttttt-tattcatttttctgaaaaaatattgtatgggtt |
24748678 |
T |
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| Q |
307 |
tgtatttaggtttttggaggaatttgagaatgtag |
341 |
Q |
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| T |
24748677 |
tgtatttaggtttttggaggaatttgaggatgtag |
24748643 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 102; Significance: 1e-50; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 7 - 160
Target Start/End: Original strand, 42363185 - 42363337
Alignment:
| Q |
7 |
agtgagatgaatggaacaaatcgaaacttgtgtgttgtatatgcacaaatcaaaactgaaaaaatgagggtgtagaaatcggaacagtgtgagaagaacg |
106 |
Q |
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|||||||||||||||||||||| ||| ||||||||||||||| |||||||| |||||||||| ||||||||| ||||||||||||||||||||||||||| |
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| T |
42363185 |
agtgagatgaatggaacaaatcaaaatttgtgtgttgtatatacacaaatcgaaactgaaaa-atgagggtgaagaaatcggaacagtgtgagaagaacg |
42363283 |
T |
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| Q |
107 |
atgaaaaaacgagagggattggaacaaagaaattggaaccgtgtgagaagagat |
160 |
Q |
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|||| ||||| | | |||||||||| ||||||||||||||||||||||||||| |
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| T |
42363284 |
atgagaaaacaaaaaggattggaacggagaaattggaaccgtgtgagaagagat |
42363337 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 47; Significance: 9e-18; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 181 - 239
Target Start/End: Original strand, 9213073 - 9213131
Alignment:
| Q |
181 |
cttttgttgcactgattctaaattttcaatctttgctttcaactcattgatgtaatcca |
239 |
Q |
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| T |
9213073 |
cttttgttgcactgattctaaatcttcaatctttgattttaactcattgatgtaatcca |
9213131 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 181 - 237
Target Start/End: Complemental strand, 9194957 - 9194901
Alignment:
| Q |
181 |
cttttgttgcactgattctaaattttcaatctttgctttcaactcattgatgtaatc |
237 |
Q |
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| T |
9194957 |
cttttgttgccctaattttaaatcttcgatctttgcttttaactcattgatgtaatc |
9194901 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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