View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11827_low_33 (Length: 338)
Name: NF11827_low_33
Description: NF11827
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11827_low_33 |
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Alignment Details
Target: chr4 (Bit Score: 296; Significance: 1e-166; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 19 - 318
Target Start/End: Original strand, 47822894 - 47823193
Alignment:
| Q |
19 |
aaaagaataaaatatacattaaaccattctaatattctactacgatggcatgaataaaaattcaacaaaccttcaacggagcaagcaaatcccaccctgg |
118 |
Q |
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| T |
47822894 |
aaaagaataaaatatacattaaaccattctaatattctactacgatggcatgaataaaaattcaacaaaccttccacggagcaagcaaatcccaccctgg |
47822993 |
T |
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| Q |
119 |
ccgaaagcctgtggcacatactactgcttctgtatcatccccgattgcttcagctagcttatcagaaccttctgtgacatcaactttaacctgcatatga |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47822994 |
ccgaaagcctgtggcacatactactgcttctgtatcatccccgattgcttcagctagcttatcagaaccttctgtgacatcaactttaacctgcatatga |
47823093 |
T |
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| Q |
219 |
actcacacatatacaccaaattacacatcatgtcattcacattcactcggacctgtttatattagtttatttgagttcaagtttcaactgctggtacaag |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47823094 |
actcacacatatacaccaaattacacatcatgtcattcacattcactcggacctgtttatattagtttatttgagttcaagtttcaactgctggtacaag |
47823193 |
T |
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