View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11827_low_35 (Length: 326)

Name: NF11827_low_35
Description: NF11827
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11827_low_35
NF11827_low_35
[»] chr1 (3 HSPs)
chr1 (13-311)||(31280365-31280662)
chr1 (155-228)||(34372459-34372532)
chr1 (157-228)||(13855021-13855092)
[»] chr5 (4 HSPs)
chr5 (155-298)||(6522080-6522223)
chr5 (155-231)||(38779445-38779521)
chr5 (160-231)||(10842611-10842682)
chr5 (175-233)||(40210963-40211021)
[»] chr7 (2 HSPs)
chr7 (175-231)||(34412165-34412221)
chr7 (164-227)||(24547035-24547098)
[»] chr6 (2 HSPs)
chr6 (158-228)||(9681006-9681076)
chr6 (155-226)||(9681952-9682020)
[»] chr8 (2 HSPs)
chr8 (162-228)||(11319352-11319418)
chr8 (175-228)||(43304349-43304402)
[»] chr4 (4 HSPs)
chr4 (156-224)||(23033487-23033554)
chr4 (167-224)||(2888809-2888865)
chr4 (165-228)||(26037221-26037285)
chr4 (156-224)||(29262535-29262602)
[»] chr3 (2 HSPs)
chr3 (165-201)||(532296-532332)
chr3 (165-201)||(564880-564916)


Alignment Details
Target: chr1 (Bit Score: 251; Significance: 1e-139; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 13 - 311
Target Start/End: Original strand, 31280365 - 31280662
Alignment:
Q  13 aggagcagagaacacataggttcatataaaattacaatttataacaccatattcagttgggtttggtatgactcattcgctacttggactatgactggag 112  Q
    |||| |||| |||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |    
T  31280365 aggaacagaaaacacatagccgcatataaaattacaatttataacaccatattcagttgggtttggtatgactcattcgctacttggactatgaccgg-g 31280463  T
Q  113 gggtgcggggatgaagtatcctttggtacgattcatggttattcttgtaaaatggaccgtaatatttaaacacaagttgcaatttgtaaaccctaagctt 212  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31280464 gggtgtggggatgaagtatcctttggtacgattcatggttattcttgtaaaatggaccgtaatatttaaacacaagttgcaatttgtaaaccctaagctt 31280563  T
Q  213 ggataatagaaaggtattgtagctgctacgtagttggagagctaggcataattggtcgaacaccgagatcaaatctcgcgtgttctctgtgtggttttt 311  Q
    |||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  31280564 ggataatagaaaggtattgtagctgctatgtagttggagacctaggcataattggtcgaacaccgagatcaaatctcgcgtgttctttgtgtggttttt 31280662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 155 - 228
Target Start/End: Complemental strand, 34372532 - 34372459
Alignment:
Q  155 tcttgtaaaatggaccgtaatatttaaacacaagttgcaatttgtaaaccctaagcttggataatagaaaggta 228  Q
    ||||||||| |||| |||| |||||||| |||||||| | ||||||||||||||||||| ||||||||| ||||    
T  34372532 tcttgtaaactggatcgtagtatttaaatacaagttgtactttgtaaaccctaagcttgaataatagaagggta 34372459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 157 - 228
Target Start/End: Complemental strand, 13855092 - 13855021
Alignment:
Q  157 ttgtaaaatggaccgtaatatttaaacacaagttgcaatttgtaaaccctaagcttggataatagaaaggta 228  Q
    ||||||| | ||||||| |||||||||| |||||| ||| ||||  |||||||||||  |||||||||||||    
T  13855092 ttgtaaactagaccgtagtatttaaacataagttgtaatctgtatgccctaagcttgattaatagaaaggta 13855021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 48; Significance: 2e-18; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 155 - 298
Target Start/End: Complemental strand, 6522223 - 6522080
Alignment:
Q  155 tcttgtaaaatggaccgtaatatttaaacacaagttgcaatttgtaaaccctaagcttggataatagaaaggtattgtagctgctacgtagttggagagc 254  Q
    ||||||||| | ||||||| ||||||||||||||||| |||||||||| |||||| ||| |||||||||||||| |  |||||||  | |||  ||||      
T  6522223 tcttgtaaactagaccgtagtatttaaacacaagttgtaatttgtaaatcctaagtttgaataatagaaaggtactacagctgctctgcagtctgagacg 6522124  T
Q  255 taggcataattggtcgaacaccgagatcaaatctcgcgtgttct 298  Q
    |||||| ||||||  |||| ||  |||||||||||| |||||||    
T  6522123 taggcacaattggctgaaccccatgatcaaatctcgagtgttct 6522080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 155 - 231
Target Start/End: Original strand, 38779445 - 38779521
Alignment:
Q  155 tcttgtaaaatggaccgtaatatttaaacacaagttgcaatttgtaaaccctaagcttggataatagaaaggtattg 231  Q
    ||||||||| ||||| ||| ||||||||||||||||| | | || ||||||||||||||  ||||||||||||||||    
T  38779445 tcttgtaaactggactgtagtatttaaacacaagttgtactatgcaaaccctaagcttgagtaatagaaaggtattg 38779521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 160 - 231
Target Start/End: Complemental strand, 10842682 - 10842611
Alignment:
Q  160 taaaatggaccgtaatatttaaacacaagttgcaatttgtaaaccctaagcttggataatagaaaggtattg 231  Q
    |||| ||||||||| ||||||||||||| ||| ||| |||||| |||||||||| ||||||||||| |||||    
T  10842682 taaattggaccgtagtatttaaacacaaattgtaatatgtaaatcctaagcttgaataatagaaagttattg 10842611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 175 - 233
Target Start/End: Complemental strand, 40211021 - 40210963
Alignment:
Q  175 tatttaaacacaagttgcaatttgtaaaccctaagcttggataatagaaaggtattgta 233  Q
    |||||| ||||||| || ||| ||||||||||||||||| ||||||||||| |||||||    
T  40211021 tatttatacacaagctgtaatatgtaaaccctaagcttgaataatagaaagatattgta 40210963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 175 - 231
Target Start/End: Complemental strand, 34412221 - 34412165
Alignment:
Q  175 tatttaaacacaagttgcaatttgtaaaccctaagcttggataatagaaaggtattg 231  Q
    ||||||||||||| ||| ||| ||||||||||||||||| |||||||||||||||||    
T  34412221 tatttaaacacaaattgtaatctgtaaaccctaagcttgaataatagaaaggtattg 34412165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 164 - 227
Target Start/End: Complemental strand, 24547098 - 24547035
Alignment:
Q  164 atggaccgtaatatttaaacacaagttgcaatttgtaaaccctaagcttggataatagaaaggt 227  Q
    |||||| ||| ||||||||||||||||| | ||| |||||||||||||||  ||||||||||||    
T  24547098 atggactgtagtatttaaacacaagttgtactttataaaccctaagcttgattaatagaaaggt 24547035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 158 - 228
Target Start/End: Original strand, 9681006 - 9681076
Alignment:
Q  158 tgtaaaatggaccgtaatatttaaacacaagttgcaatttgtaaaccctaagcttggataatagaaaggta 228  Q
    |||||| |||||||||||||||||| |||||||| ||| | ||||||||||| || | |||||||||||||    
T  9681006 tgtaaactggaccgtaatatttaaatacaagttgtaatctataaaccctaagtttagttaatagaaaggta 9681076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 155 - 226
Target Start/End: Complemental strand, 9682020 - 9681952
Alignment:
Q  155 tcttgtaaaatggaccgtaatatttaaacacaagttgcaatttgtaaaccctaagcttggataatagaaagg 226  Q
    ||||||||| ||||||   ||||||||||||| || | ||||||||||| ||||||||| ||||||||||||    
T  9682020 tcttgtaaactggacc---atatttaaacacaggtcgtaatttgtaaactctaagcttgaataatagaaagg 9681952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 162 - 228
Target Start/End: Original strand, 11319352 - 11319418
Alignment:
Q  162 aaatggaccgtaatatttaaacacaagttgcaatttgtaaaccctaagcttggataatagaaaggta 228  Q
    ||||| |||||  ||||||| ||||||||| ||| ||||||| ||||||||| ||||||||||||||    
T  11319352 aaatgaaccgtcgtatttaagcacaagttgtaatctgtaaactctaagcttgaataatagaaaggta 11319418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 175 - 228
Target Start/End: Complemental strand, 43304402 - 43304349
Alignment:
Q  175 tatttaaacacaagttgcaatttgtaaaccctaagcttggataatagaaaggta 228  Q
    ||||||||||||||||| | ||| ||||||||||| ||| ||| ||||||||||    
T  43304402 tatttaaacacaagttgtactttataaaccctaagtttgaatattagaaaggta 43304349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 156 - 224
Target Start/End: Complemental strand, 23033554 - 23033487
Alignment:
Q  156 cttgtaaaatggaccgtaatatttaaacacaagttgcaatttgtaaaccctaagcttggataatagaaa 224  Q
    |||||||| || |||||| || |||||||||||||||||||||| || ||||| |||| ||||||||||    
T  23033554 cttgtaaagtgaaccgtagtaattaaacacaagttgcaatttgt-aatcctaaacttgaataatagaaa 23033487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 167 - 224
Target Start/End: Complemental strand, 2888865 - 2888809
Alignment:
Q  167 gaccgtaatatttaaacacaagttgcaatttgtaaaccctaagcttggataatagaaa 224  Q
    ||||||| ||||||||||||||||| ||| ||| ||| ||||||||| ||||||||||    
T  2888865 gaccgtattatttaaacacaagttgtaatctgt-aactctaagcttgaataatagaaa 2888809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 165 - 228
Target Start/End: Complemental strand, 26037285 - 26037221
Alignment:
Q  165 tggaccgtaatatttaaacacaagttgcaatttgtaaaccctaagc-ttggataatagaaaggta 228  Q
    ||||||||  ||||||||||| |||||  ||||||||||| ||||| ||| ||||||||||||||    
T  26037285 tggaccgttgtatttaaacacgagttgtcatttgtaaaccataagctttgaataatagaaaggta 26037221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 156 - 224
Target Start/End: Complemental strand, 29262602 - 29262535
Alignment:
Q  156 cttgtaaaatggaccgtaatatttaaacacaagttgcaatttgtaaaccctaagcttggataatagaaa 224  Q
    |||||||| || |||||| | || |||||||||||| ||| | ||| ||||||||||||||||||||||    
T  29262602 cttgtaaactgaaccgtagttttgaaacacaagttgtaatctataa-ccctaagcttggataatagaaa 29262535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 165 - 201
Target Start/End: Complemental strand, 532332 - 532296
Alignment:
Q  165 tggaccgtaatatttaaacacaagttgcaatttgtaa 201  Q
    ||||| ||||||||||||||||||||| |||||||||    
T  532332 tggactgtaatatttaaacacaagttgtaatttgtaa 532296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 165 - 201
Target Start/End: Complemental strand, 564916 - 564880
Alignment:
Q  165 tggaccgtaatatttaaacacaagttgcaatttgtaa 201  Q
    ||||| ||||||||||||||||||||| |||||||||    
T  564916 tggactgtaatatttaaacacaagttgtaatttgtaa 564880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University