View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11827_low_36 (Length: 326)
Name: NF11827_low_36
Description: NF11827
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11827_low_36 |
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Alignment Details
Target: chr8 (Bit Score: 257; Significance: 1e-143; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 11 - 307
Target Start/End: Original strand, 3740403 - 3740699
Alignment:
| Q |
11 |
cagagagaataactctaagttgcttagttagtttgtacctgatgcagaaataaggagaacgacaagacaaatgaacatgaagacagtgtggaatttacta |
110 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
3740403 |
cagagagaataactctaagttgcttagttagtttgtacctgatgcagaaataaggagaacgacaagacaaatgaacatgaagacagtgtagaatttacta |
3740502 |
T |
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| Q |
111 |
gtcgaggaaatcatgatttctaaatctaaatattggtctatnnnnnnnntgttagcaacactatgtttgtgtctatatgtatatattagaactaatatag |
210 |
Q |
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| T |
3740503 |
gtcgaggaaatcatgatttctaaatctaaatattggtctataaaaaaaatgttagcaacactatgtttgtgtctatatgtatatattagaactaatatag |
3740602 |
T |
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| Q |
211 |
gtagacatgacaaaacaggttgaatatttttaaaatgatatgtcgatatggtctctctaagagccaactgcgaaaagtgtattgagctgaaaatcaa |
307 |
Q |
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| T |
3740603 |
gtagacatgacaaaacaagttgaatatttttaaaatgatatgtcgatatagtctctctaagagccaactgtgaaaagtgtattgagctgaaaatcaa |
3740699 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 11 - 142
Target Start/End: Original strand, 3729290 - 3729420
Alignment:
| Q |
11 |
cagagagaataactctaagttgcttagttagtttgtacctgatgcagaaataaggagaacgacaagacaaatgaacatgaagacagtgtggaatttacta |
110 |
Q |
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||||| |||||| ||||||||||||| |||||||||||||||| ||||||||| |||||||| ||||| |||||||||||||||||| ||||||||| |
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| T |
3729290 |
cagagtgaataagtctaagttgcttaaatagtttgtacctgatgtagaaataagaagaacgacgagacagatgaacatgaagacagtgcataatttacta |
3729389 |
T |
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| Q |
111 |
gtcgaggaaatcatgatttctaaatctaaata |
142 |
Q |
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| T |
3729390 |
gttgaggaaatcatgatttct-aatctaaata |
3729420 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 28 - 277
Target Start/End: Original strand, 3737047 - 3737293
Alignment:
| Q |
28 |
agttgcttagttagtttgtacctgatgcagaaataaggagaacgacaagacaaatgaacatgaagacagtgtggaatttactagtcgaggaaatcatgat |
127 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||| ||| || || |||| ||||||| ||| ||||| |||| || ||||||||||| |
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| T |
3737047 |
agttgcttagttagtttgtacctgatgcagaaattaggagaacggaaaggcatataaacaagaagacaatgtataatttgctagcagaagaaatcatgat |
3737146 |
T |
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| Q |
128 |
ttctaaatctaaatattggtctatnnnnnnnntgttagcaacactatgtttgtgtctatatgtatatattagaactaatataggtagacatgacaaaaca |
227 |
Q |
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| T |
3737147 |
ttctaaatccaaataatgttctataaagaa---gtgaccaacacaatgtttgtgtctatatgtatatattgaaaccagtataagtagatatgacaaaact |
3737243 |
T |
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| Q |
228 |
ggttgaatatttttaaaatgatatgtcgatatggtctctctaagagccaa |
277 |
Q |
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| T |
3737244 |
agtttaacatttttgaaatgacctgcccatatagtctctctaggagccaa |
3737293 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 182 - 266
Target Start/End: Original strand, 3729435 - 3729519
Alignment:
| Q |
182 |
tctatatgtatatattagaactaatataggtagacatgacaaaacaggttgaatatttttaaaatgatatgtcgatatggtctct |
266 |
Q |
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| T |
3729435 |
tctatatgtatatattggaacttatataggtagacatgacaaaacaagttgaatatatttgaaatggtatgcccatatagtctct |
3729519 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 58 - 141
Target Start/End: Complemental strand, 38483029 - 38482946
Alignment:
| Q |
58 |
aaataaggagaacgacaagacaaatgaacatgaagacagtgtggaatttactagtcgaggaaatcatgatttctaaatctaaat |
141 |
Q |
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||||||||| || ||||||||| | |||||||||||| | || |||||||||| | | ||| ||||||||||||||| ||||| |
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| T |
38483029 |
aaataaggaaaatgacaagacagaggaacatgaagacggggtagaatttactaataaaagaagtcatgatttctaaatgtaaat |
38482946 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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