View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11827_low_40 (Length: 305)
Name: NF11827_low_40
Description: NF11827
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11827_low_40 |
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Alignment Details
Target: chr8 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 286
Target Start/End: Original strand, 38441166 - 38441447
Alignment:
| Q |
1 |
aaagtgtggaggcatataattgtgttgaaactgccactattgtaacacaagacccgtcaaatggaacttgcttgtttcctatagaaatctatagtggtgg |
100 |
Q |
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| T |
38441166 |
aaagtgtggaggcatgtagttttgatggaactgccactattgtaacacaagacccgtcaaatggaacttgcttgtttcctatagaaatctatagtggtgg |
38441265 |
T |
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| Q |
101 |
aaccatgcttcaaggaggaattcatacggtcagaatccttttgattgggcttgtaatcattttccttaaatttatataaagtatatatgcatgtggacat |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||| ||||||||||||||| |
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| T |
38441266 |
aaccatgcttcaaggaggaattcatacggtcagaatccttttgattgggcttgtaatgattttccttacatttatataaag----tatgcatgtggacat |
38441361 |
T |
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| Q |
201 |
gattaatgatgatagattcgagtagtttatatgcagtcttctacctttcaatattactccactttacctctagcattgatttaaac |
286 |
Q |
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|||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38441362 |
gattaatgatgatagatttgagtagtttatatgcagtgttctacctttcaatattactccactttacctctagcattgatttaaac |
38441447 |
T |
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