View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11827_low_43 (Length: 287)

Name: NF11827_low_43
Description: NF11827
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11827_low_43
NF11827_low_43
[»] chr5 (3 HSPs)
chr5 (3-279)||(41886663-41886939)
chr5 (122-181)||(28695710-28695769)
chr5 (122-182)||(28673460-28673520)
[»] chr4 (6 HSPs)
chr4 (114-234)||(7308311-7308431)
chr4 (119-209)||(8186543-8186633)
chr4 (130-209)||(7225346-7225425)
chr4 (131-203)||(532608-532680)
chr4 (134-183)||(1518820-1518869)
chr4 (114-182)||(1481563-1481631)
[»] chr6 (1 HSPs)
chr6 (114-209)||(9411909-9412004)
[»] chr8 (2 HSPs)
chr8 (131-209)||(18314833-18314911)
chr8 (25-86)||(18314716-18314777)


Alignment Details
Target: chr5 (Bit Score: 265; Significance: 1e-148; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 3 - 279
Target Start/End: Original strand, 41886663 - 41886939
Alignment:
Q  3 gaatgtgcaatttatttatagtactgatctattcctcatctctgattgtttccctttgctggaagacctcgacctcagtgacccgatacaatgtgtacgc 102  Q
    ||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41886663 gaatgtgcaatttatttatagtactgacctattcctcatctctggttgtttccctttgctggaagacctcgacctcagtgacccgatacaatgtgtacgc 41886762  T
Q  103 tatgatgaggcagagcctctttcactggcacttttcaaactacgaaaggttaatctctctagtcatcactacatcaacgatagattgcttttcgacttgt 202  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41886763 tatgatgaggcagagcctctttcactggcacttttcaaactacgaaaggttaatctctctagtcatcactacatcaacgatagattgcttttcgacttgt 41886862  T
Q  203 ttaagaaaagagagtttctggaagaggtcatcttgcgtgactgttatcgcataacggaggttggtattgtctctgct 279  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  41886863 ttaagaaaagagagtttctggaagaggtcatcttgcgtgactgttatcgcataacggaggttggtattgtttctgct 41886939  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 122 - 181
Target Start/End: Original strand, 28695710 - 28695769
Alignment:
Q  122 tttcactggcacttttcaaactacgaaaggttaatctctctagtcatcactacatcaacg 181  Q
    ||||| || |||||||||||||  | ||||||||||||||| ||||||||||||||||||    
T  28695710 tttcattgccacttttcaaactctgcaaggttaatctctctcgtcatcactacatcaacg 28695769  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 122 - 182
Target Start/End: Original strand, 28673460 - 28673520
Alignment:
Q  122 tttcactggcacttttcaaactacgaaaggttaatctctctagtcatcactacatcaacga 182  Q
    ||||| || |||||||||||||  | |||||||||||||||  ||||||||||||||||||    
T  28673460 tttcattgccacttttcaaactctgcaaggttaatctctctcatcatcactacatcaacga 28673520  T

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Target: chr4 (Bit Score: 49; Significance: 5e-19; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 114 - 234
Target Start/End: Complemental strand, 7308431 - 7308311
Alignment:
Q  114 agagcctctttcactggcacttttcaaactacgaaaggttaatctctctagtcatcactacatcaacgatagattgcttttcgacttgtttaagaaaaga 213  Q
    |||| ||||||||| || |||||||||||| || ||||| ||||||||| ||||||  ||||||||| |||| ||||||||| |||||||||||||  |     
T  7308431 agaggctctttcacgggaacttttcaaactccgcaaggtaaatctctctcgtcatcggtacatcaacaataggttgcttttccacttgtttaagaattgt 7308332  T
Q  214 gagtttctggaagaggtcatc 234  Q
     || |||||||||||| ||||    
T  7308331 aagcttctggaagaggccatc 7308311  T

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Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 119 - 209
Target Start/End: Original strand, 8186543 - 8186633
Alignment:
Q  119 ctctttcactggcacttttcaaactacgaaaggttaatctctctagtcatcactacatcaacgatagattgcttttcgacttgtttaagaa 209  Q
    |||||||| |||||||||||||||| || ||||||||||| |||| |||| |||| |||||||| | |||||||||  ||||||| |||||    
T  8186543 ctctttcattggcacttttcaaacttcgcaaggttaatctatctaatcataactatatcaacgacaaattgctttttcacttgttaaagaa 8186633  T

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Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 130 - 209
Target Start/End: Original strand, 7225346 - 7225425
Alignment:
Q  130 gcacttttcaaactacgaaaggttaatctctctagtcatcactacatcaacgatagattgcttttcgacttgtttaagaa 209  Q
    |||||||||||||| || | ||||||||||||| ||||| | |||||||| |||  |||||||||| | |||||||||||    
T  7225346 gcacttttcaaactccgtagggttaatctctctggtcatgaatacatcaatgatgaattgcttttccatttgtttaagaa 7225425  T

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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 131 - 203
Target Start/End: Complemental strand, 532680 - 532608
Alignment:
Q  131 cacttttcaaactacgaaaggttaatctctctagtcatcactacatcaacgatagattgcttttcgacttgtt 203  Q
    ||||||||||||| || ||||||||||| |||| |||| |||||||||||||   || ||||||| |||||||    
T  532680 cacttttcaaactccgcaaggttaatctttctactcatgactacatcaacgaccaatcgcttttccacttgtt 532608  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 134 - 183
Target Start/End: Original strand, 1518820 - 1518869
Alignment:
Q  134 ttttcaaactacgaaaggttaatctctctagtcatcactacatcaacgat 183  Q
    |||||||||| || ||| |||||||| ||||||||||||| |||||||||    
T  1518820 ttttcaaactccggaagtttaatctcactagtcatcactatatcaacgat 1518869  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 114 - 182
Target Start/End: Complemental strand, 1481631 - 1481563
Alignment:
Q  114 agagcctctttcactggcacttttcaaactacgaaaggttaatctctctagtcatcactacatcaacga 182  Q
    |||| |||||||| ||||||| |||||||| || ||| |||||||||||  |||| ||||| |||||||    
T  1481631 agaggctctttcattggcactcttcaaactccgcaagcttaatctctctgatcattactacgtcaacga 1481563  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 114 - 209
Target Start/End: Complemental strand, 9412004 - 9411909
Alignment:
Q  114 agagcctctttcactggcacttttcaaactacgaaaggttaatctctctagtcatcactacatcaacgatagattgcttttcgacttgtttaagaa 209  Q
    |||| |||||||| || |||||||||||||    ||| ||||||||||| ||||||||||||||||||| | ||  || ||| |||||||||||||    
T  9412004 agagactctttcattgacacttttcaaactcaccaagattaatctctctggtcatcactacatcaacgacacatcactcttcaacttgtttaagaa 9411909  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 131 - 209
Target Start/End: Original strand, 18314833 - 18314911
Alignment:
Q  131 cacttttcaaactacgaaaggttaatctctctagtcatcactacatcaacgatagattgcttttcgacttgtttaagaa 209  Q
    ||||||||||||| |||||||||||| || ||  |||| ||||||||||||||  || ||||||| ||||||| |||||    
T  18314833 cacttttcaaactccgaaaggttaatttcgctgatcattactacatcaacgatcaatcgcttttccacttgttcaagaa 18314911  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 25 - 86
Target Start/End: Original strand, 18314716 - 18314777
Alignment:
Q  25 actgatctattcctcatctctgattgtttccctttgctggaagacctcgacctcagtgaccc 86  Q
    |||||||| ||||||||  ||||||||||||||||||| ||||| |||||||| ||| ||||    
T  18314716 actgatctcttcctcattgctgattgtttccctttgctcgaagaactcgaccttagttaccc 18314777  T

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