View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11827_low_44 (Length: 286)
Name: NF11827_low_44
Description: NF11827
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11827_low_44 |
 | |
|
| [»] scaffold0627 (1 HSPs) |
| | |
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Alignment Details
Target: chr5 (Bit Score: 264; Significance: 1e-147; HSPs: 13)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 1 - 276
Target Start/End: Complemental strand, 8536658 - 8536383
Alignment:
| Q |
1 |
tgcccttattttgataatcttccgtctcacgttattgctcacattttgcttcaacttccatttaagtcgcttctcatttgtaaatctgtgtgcaaaattt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
8536658 |
tgcccttattttgataatcttccgtctcacgttattgctcacattctgcttcaacttccatttaagtcgcttctcatttgtaaatctgtgtgcaaaattt |
8536559 |
T |
|
| Q |
101 |
ggaaaacattgatttcagagtcacattttgctaaatcccactttgagcaatcaccactcagtctcatgattcggaccaatgactatagccgagtttcaag |
200 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
8536558 |
ggaaaacattgatttcagaatcacattttgctaaatcccactttgagcaatcaccactcagtctcatgattcggaccaatgactatagccgagtttcaag |
8536459 |
T |
|
| Q |
201 |
aacaatgtaccttcttgagtctgatcctcaaaagtttgagattggaagcaacaatcatgtgaaacttgtgcctatg |
276 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
8536458 |
aacaatgtaccttcttgagtctgatcctcaaaagtttgagattggaagcaacgatcatgtgaaacttgtgcctatg |
8536383 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 3 - 276
Target Start/End: Original strand, 1599251 - 1599524
Alignment:
| Q |
3 |
cccttattttgataatcttccgtctcacgttattgctcacattttgcttcaacttccatttaagtcgcttctcatttgtaaatctgtgtgcaaaatttgg |
102 |
Q |
| |
|
||||| ||||||||||||| | |||||||| | ||| | |||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1599251 |
ccctttttttgataatctttcatctcacgtcactgcccgcattctgcttcaacttcctattaagtcgcttctcatttgtaaatctgtgtgcaaaatttgg |
1599350 |
T |
|
| Q |
103 |
aaaacattgatttcagagtcacattttgctaaatcccactttgagcaatcaccactcagtctcatgattcggaccaatgactatagccgagtttcaagaa |
202 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||| |||||||||| ||||||||| ||||||||||||||||||||||||||| |||||| ||||||| |
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|
| T |
1599351 |
aaaacattgatttcagaatcacattttgctaaatcgcactttgagcgatcaccacttagtctcatgattcggaccaatgactattaccgagtatcaagaa |
1599450 |
T |
|
| Q |
203 |
caatgtaccttcttgagtctgatcctcaaaagtttgagattggaagcaacaatcatgtgaaacttgtgcctatg |
276 |
Q |
| |
|
| ||||||||||||||| ||| ||| ||||||||||||||||||||||| ||| |||||| |||| ||||||| |
|
|
| T |
1599451 |
ccttgtaccttcttgagtgtgaacctgaaaagtttgagattggaagcaacgatcgtgtgaagcttgcgcctatg |
1599524 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 47 - 275
Target Start/End: Complemental strand, 8637996 - 8637768
Alignment:
| Q |
47 |
tgcttcaacttccatttaagtcgcttctcatttgtaaatctgtgtgcaaaatttggaaaacattgatttcagagtcacattttgctaaatcccactttga |
146 |
Q |
| |
|
||||||||||| | ||||||| |||||||||||||||| ||||||||| |||||||||||| ||||||| || ||||||||||||||| || ||||| |
|
|
| T |
8637996 |
tgcttcaactttccattaagtctcttctcatttgtaaatgtgtgtgcaagatttggaaaacaatgatttcggaaccacattttgctaaattgcaatttga |
8637897 |
T |
|
| Q |
147 |
gcaatcaccactcagtctcatgattcggaccaatgactatagccgagtttcaagaacaatgtaccttcttgagtctgatcctcaaaagtttgagattgga |
246 |
Q |
| |
|
|| | | || || ||||||||||||||||| ||||| ||| | ||| |||||||| |||||||||||||||| ||||| | ||||||||||||||||| |
|
|
| T |
8637896 |
gcgagcgccccttagtctcatgattcggacaaatgatggtagactagtgtcaagaaccatgtaccttcttgagtgtgatcatgaaaagtttgagattgga |
8637797 |
T |
|
| Q |
247 |
agcaacaatcatgtgaaacttgtgcctat |
275 |
Q |
| |
|
||||||||||||||||| |||| |||||| |
|
|
| T |
8637796 |
agcaacaatcatgtgaagcttgcgcctat |
8637768 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 1 - 260
Target Start/End: Complemental strand, 8530088 - 8529835
Alignment:
| Q |
1 |
tgcccttattttgataatcttccgtctcacgttattgctcacattttgcttcaacttccatttaagtcgcttctcatttgtaaatctgtgtgcaaaattt |
100 |
Q |
| |
|
||||||||||||||||| |||||||||||| | | ||| |||||| | |||| ||||||||||||||| ||||||||||||||| |||||||||| ||| |
|
|
| T |
8530088 |
tgcccttattttgataaacttccgtctcacctcactgcccacattctccttcgacttccatttaagtctgttctcatttgtaaatgtgtgtgcaaagttt |
8529989 |
T |
|
| Q |
101 |
ggaaaacattgatttcagagtcacattttgctaaatcccactttgagcaatcaccactcagtctcatgattcggaccaatgactatagccgagtttcaag |
200 |
Q |
| |
|
|||||||| | |||||||| ||||| ||||||||||| |||||||||| ||||||| | |||||||||||||| || ||| |||||| ||||| |
|
|
| T |
8529988 |
ggaaaacaattatttcagaatcacaatttgctaaatcgcactttgagcgatcaccaattagtctcatgattcgaac--gcgac----accgagtgtcaag |
8529895 |
T |
|
| Q |
201 |
aacaatgtaccttcttgagtctgatcctcaaaagtttgagattggaagcaacaatcatgt |
260 |
Q |
| |
|
||| ||||||||||||||| || ||| | ||||||||||||||||||||||||||||| |
|
|
| T |
8529894 |
aaccctgtaccttcttgagtgcgagcctgataagtttgagattggaagcaacaatcatgt |
8529835 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 4 - 253
Target Start/End: Complemental strand, 8645384 - 8645135
Alignment:
| Q |
4 |
ccttattttgataatcttccgtctcacgttattgctcacattttgcttcaacttccatttaagtcgcttctcatttgtaaatctgtgtgcaaaatttgga |
103 |
Q |
| |
|
||||| |||||||||||||| || ||| | ||||| ||||| |||||||| ||||| |||| || |||||||||||| ||| ||||||||| ||||||| |
|
|
| T |
8645384 |
ccttactttgataatcttccatcacacatcattgcccacatgttgcttcatcttcccattaaatctcttctcatttgtgaatgtgtgtgcaagatttgga |
8645285 |
T |
|
| Q |
104 |
aaacattgatttcagagtcacattttgctaaatcccactttgagcaatcaccactcagtctcatgattcggaccaatgactatagccgagtttcaagaac |
203 |
Q |
| |
|
||||| | |||||||| ||||||||||||||| ||||||||| ||||| | | ||||||||||||||| |||||| ||| | ||| |||||||| |
|
|
| T |
8645284 |
aaacacttatttcagaaccacattttgctaaattgaactttgagcgatcacaagtttgtctcatgattcggatagatgactgtagactagtgtcaagaac |
8645185 |
T |
|
| Q |
204 |
aatgtaccttcttgagtctgatcctcaaaagtttgagattggaagcaaca |
253 |
Q |
| |
|
|||||||||||||||| ||||||| |||||||| | ||||||||||||| |
|
|
| T |
8645184 |
tatgtaccttcttgagtgtgatcctgaaaagtttcaaattggaagcaaca |
8645135 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 1 - 268
Target Start/End: Original strand, 8547086 - 8547353
Alignment:
| Q |
1 |
tgcccttattttgataatcttccgtctcacgttattgctcacattttgcttcaacttccatttaagtcgcttctcatttgtaaatctgtgtgcaaaattt |
100 |
Q |
| |
|
||||||||||||||||||||||| |||||| | | ||| |||||| ||||| |||||| | ||||| |||||||||||||||| ||| ||||| |||| |
|
|
| T |
8547086 |
tgcccttattttgataatcttccatctcacctcactgcccacattctgcttaaacttcacatcaagtctcttctcatttgtaaatgtgtttgcaagattt |
8547185 |
T |
|
| Q |
101 |
ggaaaacattgatttcagagtcacattttgctaaatcccactttgagcaatcaccactcagtctcatgattcggaccaatgactatagccgagtttcaag |
200 |
Q |
| |
|
|||||||| | |||||||| |||||||||||||| ||||||||| ||||| | | |||| |||||| |||| ||||| |||| | ||| ||||| |
|
|
| T |
8547186 |
ggaaaacaattatttcagaacaacattttgctaaattgcactttgagagatcacaagtttgtctaatgatttggacagatgacgatagactagtgtcaag |
8547285 |
T |
|
| Q |
201 |
aacaatgtaccttcttgagtctgatcctcaaaagtttgagattggaagcaacaatcatgtgaaacttg |
268 |
Q |
| |
|
||| ||||||| |||||||| ||| ||| ||||||| ||||||||||||||||||||||||| |||| |
|
|
| T |
8547286 |
aaccatgtaccatcttgagtgtgagcctgaaaagttcaagattggaagcaacaatcatgtgaagcttg |
8547353 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 3 - 275
Target Start/End: Original strand, 9073683 - 9073955
Alignment:
| Q |
3 |
cccttattttgataatcttccgtctcacgttattgctcacattttgcttcaacttccatttaagtcgcttctcatttgtaaatctgtgtgcaaaatttgg |
102 |
Q |
| |
|
||||| |||||| |||||||| |||||| | | ||| | ||| |||||| |||||| | ||| | |||||||||||||||| |||||||||||||||| |
|
|
| T |
9073683 |
ccctttttttgacaatcttccatctcacctcactgccaatattctgcttcgacttcccgtcaagcctcttctcatttgtaaatgtgtgtgcaaaatttgg |
9073782 |
T |
|
| Q |
103 |
aaaacattgatttcagagtcacattttgctaaatcccactttgagcaatcaccactcagtctcatgattcggaccaatgactatagccgagtttcaagaa |
202 |
Q |
| |
|
|||| | | |||||||| ||||||||||||||| || ||||||| | ||||||| ||| | |||||||||||| |||| ||| |||| || |||| |
|
|
| T |
9073783 |
aaaagacttatttcagaaccacattttgctaaattgcaatttgagcgagcaccacttagttttatgattcggacccttgacgatattagagtgtcgagaa |
9073882 |
T |
|
| Q |
203 |
caatgtaccttcttgagtctgatcctcaaaagtttgagattggaagcaacaatcatgtgaaacttgtgcctat |
275 |
Q |
| |
|
| |||||||||||||||| ||| ||| ||||||||||||||||||||||||| ||||| || |||| |||||| |
|
|
| T |
9073883 |
ccatgtaccttcttgagtgtgaacctgaaaagtttgagattggaagcaacaaacatgtcaagcttgagcctat |
9073955 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 4 - 175
Target Start/End: Complemental strand, 8678892 - 8678721
Alignment:
| Q |
4 |
ccttattttgataatcttccgtctcacgttattgctcacattttgcttcaacttccatttaagtcgcttctcatttgtaaatctgtgtgcaaaatttgga |
103 |
Q |
| |
|
||||| |||||||||||||| || ||| | ||||| |||||||||||||| ||||| |||| || |||||||||||||||| ||||||||| ||||||| |
|
|
| T |
8678892 |
ccttactttgataatcttccatcacacatcattgcccacattttgcttcatcttcccattaaatctcttctcatttgtaaatgtgtgtgcaagatttgga |
8678793 |
T |
|
| Q |
104 |
aaacattgatttcagagtcacattttgctaaatcccactttgagcaatcaccactcagtctcatgattcgga |
175 |
Q |
| |
|
||||| | |||||||| ||||||||||||||| ||||||||| ||||| | | ||||||||||||||| |
|
|
| T |
8678792 |
aaacacttatttcagaaccacattttgctaaattgaactttgagcgatcacaagtttgtctcatgattcgga |
8678721 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 1 - 268
Target Start/End: Original strand, 2873485 - 2873752
Alignment:
| Q |
1 |
tgcccttattttgataatcttccgtctcacgttattgctcacattttgcttcaacttccatttaagtcgcttctcatttgtaaatctgtgtgcaaaattt |
100 |
Q |
| |
|
|||||||| |||||||||||||| |||||| | | | | |||||| | ||||||||||| ||||||| |||||||| |||| || ||||||||||| || |
|
|
| T |
2873485 |
tgcccttactttgataatcttccatctcacttaactacccacattcttcttcaacttcccattaagtctcttctcatgtgtagatgtgtgtgcaaaactt |
2873584 |
T |
|
| Q |
101 |
ggaaaacattgatttcagagtcacattttgctaaatcccactttgagcaatcaccactcagtctcatgattcggaccaatgactatagccgagtttcaag |
200 |
Q |
| |
|
|||| ||| | |||||||| ||||||||||||||| || ||||||| | ||||| | ||| || ||||||| | ||| ||| |||| ||||| |
|
|
| T |
2873585 |
ggaatacacttatttcagaaccacattttgctaaattgcaatttgagcgagcaccagttagtttcgtgattcgaaatttagacaatataggagtgtcaag |
2873684 |
T |
|
| Q |
201 |
aacaatgtaccttcttgagtctgatcctcaaaagtttgagattggaagcaacaatcatgtgaaacttg |
268 |
Q |
| |
|
|| | ||||||||||||| || || |||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
2873685 |
aaacctataccttcttgagtgcgaagctgaaaagtttgagattggaagcaacaatcatgtgaagcttg |
2873752 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 1 - 187
Target Start/End: Complemental strand, 9004528 - 9004342
Alignment:
| Q |
1 |
tgcccttattttgataatcttccgtctcacgttattgctcacattttgcttcaacttccatttaagtcgcttctcatttgtaaatctgtgtgcaaaattt |
100 |
Q |
| |
|
|||||||| |||| ||||||||| |||||| | | | |||||| ||||||| ||||| ||||||| ||||| ||||||| || ||||||||| |||| |
|
|
| T |
9004528 |
tgcccttactttgctaatcttccatctcacctcactaaccacattctgcttcatcttcccattaagtctcttcttatttgtagatgtgtgtgcaagattt |
9004429 |
T |
|
| Q |
101 |
ggaaaacattgatttcagagtcacattttgctaaatcccactttgagcaatcaccactcagtctcatgattcggaccaatgactata |
187 |
Q |
| |
|
|||||||| | |||||| | ||||||||||||||| || ||||||| | ||||| | ||||||||||||||||| ||||||||| |
|
|
| T |
9004428 |
ggaaaacaattatttcataaccacattttgctaaattgcaatttgagcgagcaccaattagtctcatgattcggacttatgactata |
9004342 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 268
Target Start/End: Original strand, 2844039 - 2844306
Alignment:
| Q |
1 |
tgcccttattttgataatcttccgtctcacgttattgctcacattttgcttcaacttccatttaagtcgcttctcatttgtaaatctgtgtgcaaaattt |
100 |
Q |
| |
|
|||||||| |||||||||||||| ||||| | | | | |||||| | || | ||||| ||||||| |||||||| |||| || |||||||||||||| |
|
|
| T |
2844039 |
tgcccttactttgataatcttccatctcaattaactacccacattctcctaaagcttcccattaagtctcttctcatatgtagatgtgtgtgcaaaattt |
2844138 |
T |
|
| Q |
101 |
ggaaaacattgatttcagagtcacattttgctaaatcccactttgagcaatcaccactcagtctcatgattcggaccaatgactatagccgagtttcaag |
200 |
Q |
| |
|
|||| ||| | || ||||| ||||||||||||||| || ||||||| | ||||| | ||| || ||||||| | ||| ||| |||| ||||| |
|
|
| T |
2844139 |
ggaatacacttatatcagaaccacattttgctaaattgcaatttgagcgagcaccagttagtttcgtgattcgaaatttagacaatataggagtgtcaag |
2844238 |
T |
|
| Q |
201 |
aacaatgtaccttcttgagtctgatcctcaaaagtttgagattggaagcaacaatcatgtgaaacttg |
268 |
Q |
| |
|
|| | ||||||||||||| ||| || |||||||||||||||||||||| ||||||||||| |||| |
|
|
| T |
2844239 |
aaacctataccttcttgagtgtgaagctgaaaagtttgagattggaagcaaaaatcatgtgaagcttg |
2844306 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #12
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 62 - 268
Target Start/End: Original strand, 2855933 - 2856139
Alignment:
| Q |
62 |
ttaagtcgcttctcatttgtaaatctgtgtgcaaaatttggaaaacattgatttcagagtcacattttgctaaatcccactttgagcaatcaccactcag |
161 |
Q |
| |
|
||||||| |||||||| |||| || |||||||||||||||||| ||| | || ||||| ||||||||||||||| || ||||||| | ||||| | || |
|
|
| T |
2855933 |
ttaagtctcttctcatatgtagatgtgtgtgcaaaatttggaatacacttatatcagaaccacattttgctaaattgcaatttgagcgagcaccagttag |
2856032 |
T |
|
| Q |
162 |
tctcatgattcggaccaatgactatagccgagtttcaagaacaatgtaccttcttgagtctgatcctcaaaagtttgagattggaagcaacaatcatgtg |
261 |
Q |
| |
|
| || ||||||| | ||| ||| |||| ||||||| | ||||||||||||| ||| || |||||||||||||||||||||| ||||||||| |
|
|
| T |
2856033 |
tttcgtgattcgaaatttagacaatataggagtgtcaagaaacctataccttcttgagtgtgaagctgaaaagtttgagattggaagcaaaaatcatgtg |
2856132 |
T |
|
| Q |
262 |
aaacttg |
268 |
Q |
| |
|
|| |||| |
|
|
| T |
2856133 |
aagcttg |
2856139 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 62 - 119
Target Start/End: Original strand, 2904052 - 2904109
Alignment:
| Q |
62 |
ttaagtcgcttctcatttgtaaatctgtgtgcaaaatttggaaaacattgatttcaga |
119 |
Q |
| |
|
||||||| |||||||| |||| || |||||||||||||||||| ||| | |||||||| |
|
|
| T |
2904052 |
ttaagtctcttctcatatgtagatgtgtgtgcaaaatttggaatacacttatttcaga |
2904109 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 151; Significance: 6e-80; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 151; E-Value: 6e-80
Query Start/End: Original strand, 1 - 263
Target Start/End: Original strand, 48360802 - 48361063
Alignment:
| Q |
1 |
tgcccttattttgataatcttccgtctcacgttattgctcacattttgcttcaacttccatttaagtcgcttctcatttgtaaatctgtgtgcaaaattt |
100 |
Q |
| |
|
||||||||||||||||||||||| | |||| | | ||| |||||| | ||||||||||| ||||||| ||||| ||||||||||||||||||||||||| |
|
|
| T |
48360802 |
tgcccttattttgataatcttccatatcacctcactgcccacattctccttcaacttcccattaagtctcttcttatttgtaaatctgtgtgcaaaattt |
48360901 |
T |
|
| Q |
101 |
ggaaaacattgatttcagagtcacattttgctaaatcccactttgagcaatcaccactcagtctcatgattcggaccaatgactatagccgagtttcaag |
200 |
Q |
| |
|
|||||||| |||||||||| ||||| ||||||||||| |||||||||| ||||||||| |||||||||||||||||| ||||||||| |||| ||||| |
|
|
| T |
48360902 |
ggaaaacactgatttcagaatcacaatttgctaaatcgcactttgagcgatcaccacttagtctcatgattcggacc-ctgactatagaggagtgtcaag |
48361000 |
T |
|
| Q |
201 |
aacaatgtaccttcttgagtctgatcctcaaaagtttgagattggaagcaacaatcatgtgaa |
263 |
Q |
| |
|
||| |||||||||||||||| ||||||| ||||||||||||||||||||||||| |||||||| |
|
|
| T |
48361001 |
aaccatgtaccttcttgagtgtgatcctgaaaagtttgagattggaagcaacaaccatgtgaa |
48361063 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 3 - 268
Target Start/End: Complemental strand, 35780996 - 35780731
Alignment:
| Q |
3 |
cccttattttgataatcttccgtctcacgttattgctcacattttgcttcaacttccatttaagtcgcttctcatttgtaaatctgtgtgcaaaatttgg |
102 |
Q |
| |
|
||||||||||||||||||||| || ||| | | || |||||||||||||||||||| | || || ||||||||||||| || |||||||| ||| || |
|
|
| T |
35780996 |
cccttattttgataatcttccatcccacctcaccgcccacattttgcttcaacttcccataaaatctcttctcatttgtagatgtgtgtgcataatctga |
35780897 |
T |
|
| Q |
103 |
aaaacattgatttcagagtcacattttgctaaatcccactttgagcaatcaccactcagtctcatgattcggaccaatgactatag-ccgagtttcaaga |
201 |
Q |
| |
|
|||||| |||||||||| | || |||||||||| |||||||||| ||||||| ||||||||| |||||||| | || ||| | || |||||| |
|
|
| T |
35780896 |
aaaacaatgatttcagaaccgcaatttgctaaattgcactttgagctatcaccaactagtctcatggttcggacccgtcgct-tagatcatgtgtcaaga |
35780798 |
T |
|
| Q |
202 |
acaatgtaccttcttgagtctgatcctcaaaagtttgagattggaagcaacaatcatgtgaaacttg |
268 |
Q |
| |
|
|| || |||||||||||| ||| ||| ||||||||||| ||||||| ||||||| |||||| |||| |
|
|
| T |
35780797 |
accctgcaccttcttgagtgtgagcctgaaaagtttgagtttggaaggaacaatcttgtgaagcttg |
35780731 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 113; Significance: 3e-57; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 7 - 275
Target Start/End: Complemental strand, 16717479 - 16717211
Alignment:
| Q |
7 |
tattttgataatcttccgtctcacgttattgctcacattttgcttcaacttccatttaagtcgcttctcatttgtaaatctgtgtgcaaaatttggaaaa |
106 |
Q |
| |
|
|||||||||| |||||| || ||| | | || |||||||||||||||||||| | ||||| |||||||||||||||| |||||||||||||||||||| |
|
|
| T |
16717479 |
tattttgatattcttccatcccacctcaccgcccacattttgcttcaacttcccatcaagtctcttctcatttgtaaatgtgtgtgcaaaatttggaaaa |
16717380 |
T |
|
| Q |
107 |
cattgatttcagagtcacattttgctaaatcccactttgagcaatcaccactcagtctcatgattcggaccaatgactatagccgagtttcaagaacaat |
206 |
Q |
| |
|
| |||||||||| || ||||||||||||| |||||||||||||||||| | |||||||||||||| || | |||||| ||||| |||||||| | |
|
|
| T |
16717379 |
gaatgatttcagaatcgcattttgctaaattacactttgagcaatcaccaattagtctcatgattcgaacaagatactataaacgagtgtcaagaaccct |
16717280 |
T |
|
| Q |
207 |
gtaccttcttgagtctgatcctcaaaagtttgagattggaagcaacaatcatgtgaaacttgtgcctat |
275 |
Q |
| |
|
|||||||| |||| ||||| |||||||||||||||||||||||||||||||||| |||| |||||| |
|
|
| T |
16717279 |
ctaccttctagagtgcgatccagaaaagtttgagattggaagcaacaatcatgtgaatcttgagcctat |
16717211 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 112; Significance: 1e-56; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 1 - 260
Target Start/End: Complemental strand, 9444249 - 9443996
Alignment:
| Q |
1 |
tgcccttattttgataatcttccgtctcacgttattgctcacattttgcttcaacttccatttaagtcgcttctcatttgtaaatctgtgtgcaaaattt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||| | | ||| |||||| | |||| ||||||||||||||| |||||||||||||||||||||||||| ||| |
|
|
| T |
9444249 |
tgcccttattttgataatcttccgtctcacctcactgcccacattctccttcgacttccatttaagtctgttctcatttgtaaatctgtgtgcaaagttt |
9444150 |
T |
|
| Q |
101 |
ggaaaacattgatttcagagtcacattttgctaaatcccactttgagcaatcaccactcagtctcatgattcggaccaatgactatagccgagtttcaag |
200 |
Q |
| |
|
|||||||| |||||||||| ||||| |||||||||| |||||||||| ||||||| | |||||||||||||| || | ||| |||||| ||||| |
|
|
| T |
9444149 |
ggaaaacaatgatttcagaatcacaatttgctaaattgcactttgagcgatcaccaattagtctcatgattcgaac--acgac----accgagtgtcaag |
9444056 |
T |
|
| Q |
201 |
aacaatgtaccttcttgagtctgatcctcaaaagtttgagattggaagcaacaatcatgt |
260 |
Q |
| |
|
||| | ||||||||||||| || ||| | ||||||||||||||||||||||||||||| |
|
|
| T |
9444055 |
aaccctataccttcttgagtgcgagcctgataagtttgagattggaagcaacaatcatgt |
9443996 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0627 (Bit Score: 110; Significance: 2e-55; HSPs: 1)
Name: scaffold0627
Description:
Target: scaffold0627; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 38 - 275
Target Start/End: Complemental strand, 5735 - 5498
Alignment:
| Q |
38 |
ctcacattttgcttcaacttccatttaagtcgcttctcatttgtaaatctgtgtgcaaaatttggaaaacattgatttcagagtcacattttgctaaatc |
137 |
Q |
| |
|
|||||||||| ||||||||||| | ||||| |||||||||||||||| ||||||||||||||||||| || |||||||||| ||||||||||||||| |
|
|
| T |
5735 |
ctcacatttttcttcaacttcccatcaagtctcttctcatttgtaaatgtgtgtgcaaaatttggaaagcaatgatttcagaaccacattttgctaaatt |
5636 |
T |
|
| Q |
138 |
ccactttgagcaatcaccactcagtctcatgattcggaccaatgactatagccgagtttcaagaacaatgtaccttcttgagtctgatcctcaaaagttt |
237 |
Q |
| |
|
|||||||||| |||||| | |||||||||||||| || | ||||||| ||||| |||||||| | ||||||||||| | |||||| |||||||| |
|
|
| T |
5635 |
acactttgagcgatcaccgattagtctcatgattcgaacaagatactatagacgagtgtcaagaaccctataccttcttgaatgcgatcctaaaaagttt |
5536 |
T |
|
| Q |
238 |
gagattggaagcaacaatcatgtgaaacttgtgcctat |
275 |
Q |
| |
|
|||||||||||||||||||||||||| |||| |||||| |
|
|
| T |
5535 |
gagattggaagcaacaatcatgtgaagcttgagcctat |
5498 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 5131661 - 5131603
Alignment:
| Q |
1 |
tgcccttattttgataatcttccgtctcacgttattgctcacattttgcttcaacttcc |
59 |
Q |
| |
|
||||||||||||||||||||||| || ||| | | ||| |||||||||||| ||||||| |
|
|
| T |
5131661 |
tgcccttattttgataatcttccatcacacctcactgcccacattttgcttaaacttcc |
5131603 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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