View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11827_low_53 (Length: 229)
Name: NF11827_low_53
Description: NF11827
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11827_low_53 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 171; Significance: 6e-92; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 5 - 229
Target Start/End: Original strand, 6361984 - 6362208
Alignment:
| Q |
5 |
ggtaaaccagaaatgcatattgattaaatcaactcactcattgtactaaaattaagatccaaacatacaatagcatcaacnnnnnnnttatctttgcata |
104 |
Q |
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| T |
6361984 |
ggtaaaccagaaatgcatattgattaaatcacctcactcattgtactaaaattaagatccaaacatacaatagcatcaacaaaaaaattatctttgcata |
6362083 |
T |
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| Q |
105 |
acatgtcaaactaatgagcttannnnnnnctccccttatgttgaatacatcaaatcctccagaatcattgaaataaacaaataaattatcatcatttgaa |
204 |
Q |
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|||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
6362084 |
acatttcaaactaatgagcttatttttttctccccttatgttgaatacatcaaatcctccagaatcattgaaataaacaaataaattatcttcatttgaa |
6362183 |
T |
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| Q |
205 |
gtatgaactatctaaaagatcctaa |
229 |
Q |
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| T |
6362184 |
gtatgaactatctaaaagatcctaa |
6362208 |
T |
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