View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11827_low_55 (Length: 220)
Name: NF11827_low_55
Description: NF11827
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11827_low_55 |
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Alignment Details
Target: chr8 (Bit Score: 204; Significance: 1e-111; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 208
Target Start/End: Original strand, 9213031 - 9213238
Alignment:
| Q |
1 |
atcgacaatttccatcgtttccatcttcacctttttcgattccttttgttgcactgattctaaatcttcaatctttgattttaactcattgatgtaatcc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9213031 |
atcgacaatttccatcgtttccatcttcacctttttcgattccttttgttgcactgattctaaatcttcaatctttgattttaactcattgatgtaatcc |
9213130 |
T |
|
| Q |
101 |
actgcatctgataaaagagaagctttatccatctttgaaacatttggaaccacagatcttaaagcataaaatctatggtttagtttctctctcctttgtc |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
9213131 |
actgcatctgataaaagagaagctttatccatctttgaaacatttggaaccacagatcttaaagcgtaaaatctatggtttagtttctctctcctttgtc |
9213230 |
T |
|
| Q |
201 |
tctctgct |
208 |
Q |
| |
|
|||||||| |
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|
| T |
9213231 |
tctctgct |
9213238 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 1 - 208
Target Start/End: Complemental strand, 9194999 - 9194792
Alignment:
| Q |
1 |
atcgacaatttccatcgtttccatcttcacctttttcgattccttttgttgcactgattctaaatcttcaatctttgattttaactcattgatgtaatcc |
100 |
Q |
| |
|
||||||||||| |||||||| |||| || ||||||||||||||||||||||| || ||| ||||||||| ||||||| ||||||||||||||||||||| |
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| T |
9194999 |
atcgacaattttcatcgttttcatcatcgcctttttcgattccttttgttgccctaattttaaatcttcgatctttgcttttaactcattgatgtaatct |
9194900 |
T |
|
| Q |
101 |
actgcatctgataaaagagaagctttatccatctttgaaacatttggaaccacagatcttaaagcataaaatctatggtttagtttctctctcctttgtc |
200 |
Q |
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|||||||| ||||| | |||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
9194899 |
actgcatcagataacaaagaagctttatccatctttgaaacgtttggaaccacagatcttaaagcatagaatctatggtttagtttctctctcctttgtc |
9194800 |
T |
|
| Q |
201 |
tctctgct |
208 |
Q |
| |
|
|||||||| |
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|
| T |
9194799 |
tctctgct |
9194792 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 122 - 208
Target Start/End: Complemental strand, 28081217 - 28081131
Alignment:
| Q |
122 |
gctttatccatctttgaaacatttggaaccacagatcttaaagcataaaatctatggtttagtttctctctcctttgtctctctgct |
208 |
Q |
| |
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||||| |||||||| ||||||||||||||||||| | || |||||| ||| | ||||| || || ||||| ||||||||||||||| |
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| T |
28081217 |
gctttgtccatcttagaaacatttggaaccacagcacgtagagcatagaatttttggttaagcttttctcttctttgtctctctgct |
28081131 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 43 - 101
Target Start/End: Complemental strand, 17371053 - 17370995
Alignment:
| Q |
43 |
cttttgttgcactgattctaaatcttcaatctttgattttaactcattgatgtaatcca |
101 |
Q |
| |
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||||||||||||| ||||||||| ||||||||||| ||| ||||||||||||||||||| |
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|
| T |
17371053 |
cttttgttgcactaattctaaattttcaatctttgctttcaactcattgatgtaatcca |
17370995 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 43 - 100
Target Start/End: Complemental strand, 24748802 - 24748745
Alignment:
| Q |
43 |
cttttgttgcactgattctaaatcttcaatctttgattttaactcattgatgtaatcc |
100 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||| ||| ||||||| |||||||||| |
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|
| T |
24748802 |
cttttgttgcactgattctaaattttcaatctttgctttcaactcatagatgtaatcc |
24748745 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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