View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11827_low_57 (Length: 215)
Name: NF11827_low_57
Description: NF11827
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11827_low_57 |
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Alignment Details
Target: chr3 (Bit Score: 177; Significance: 1e-95; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 18 - 202
Target Start/End: Original strand, 9788630 - 9788814
Alignment:
| Q |
18 |
caagtctctaaccacaaaccaggagacaaattccaaccaaaattctgtccagatgagagccacaactatgcatatagcaaacatgttaatgtatatatat |
117 |
Q |
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| T |
9788630 |
caagtctctaaccacaaaccaggagacaaattccaaccaaaattctgtccaaatgagagccacaactatgcatatagcaaacatgttaatgtatatatat |
9788729 |
T |
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| Q |
118 |
acacacatagggaagaataagctttttatttctttaaaaccattttttctctgaagaaaaatctcttggcaattttgatgttggt |
202 |
Q |
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| T |
9788730 |
acacacatagggaagaataagctttttatttctttaaaaccattttttctctgacgaaaaatctcttggcaattttgatgttggt |
9788814 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 18 - 203
Target Start/End: Complemental strand, 3587767 - 3587583
Alignment:
| Q |
18 |
caagtctctaaccacaaaccaggagacaaattccaaccaaaattctgtccagatgagagccacaactatgcatatagcaaacatgttaatgtatatatat |
117 |
Q |
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|||||||||||||| ||||||||| | ||||||||||||||||||||| || ||||||||||||||||| | |||||||||||| |||| |||||||| |
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| T |
3587767 |
caagtctctaaccataaaccaggaaataaattccaaccaaaattctgttcaaatgagagccacaactatccctatagcaaacatattaa--tatatatac |
3587670 |
T |
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| Q |
118 |
acacacatagggaagaataa-gctttttatttctttaaaaccattttttctctgaagaaaaatctcttggcaattttgatgttggtg |
203 |
Q |
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| T |
3587669 |
acacacataaggaagaataaggttttttatttctttgaaaccattttttctctgacgaaaaatttcttagcaattttgatgttggtg |
3587583 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 142; Significance: 1e-74; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 18 - 203
Target Start/End: Complemental strand, 44505570 - 44505385
Alignment:
| Q |
18 |
caagtctctaaccacaaaccaggagacaaattccaaccaaaattctgtccagatgagagccacaactatgcatatagcaaacatgttaatgtatatatat |
117 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||| | |
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| T |
44505570 |
caagtctctaaccacaaaccaggagacaaattctaaccaaaattctgtccagatgagagccacaactatccatatagcaaacatgttaatatatatacac |
44505471 |
T |
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| Q |
118 |
acacacatagggaagaataagctttttatttctttaaaaccattttttctctgaagaaaaatctcttggcaattttgatgttggtg |
203 |
Q |
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| T |
44505470 |
acacacataaggaagaataaggtttttatttctttaaaaccattttttctctaacgaaaaatttcttagcaattttgatgttggtg |
44505385 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 91; Significance: 3e-44; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 18 - 152
Target Start/End: Original strand, 10013497 - 10013631
Alignment:
| Q |
18 |
caagtctctaaccacaaaccaggagacaaattccaaccaaaattctgtccagatgagagccacaactatgcatatagcaaacatgttaatgtatatatat |
117 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||| ||| | ||||||||||||||||| |||||||| |
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| T |
10013497 |
caagtctctaactacaaaccaggagacaaattccaaccaaaattctgtccaaatgagagccacaattatcccaatagcaaacatgttaatatatatatac |
10013596 |
T |
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| Q |
118 |
acacacatagggaagaataagctttttatttcttt |
152 |
Q |
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| T |
10013597 |
acatacataaggaagaataagatttttatttcttt |
10013631 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 18 - 152
Target Start/End: Original strand, 10020638 - 10020772
Alignment:
| Q |
18 |
caagtctctaaccacaaaccaggagacaaattccaaccaaaattctgtccagatgagagccacaactatgcatatagcaaacatgttaatgtatatatat |
117 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||| ||| | ||||||||||||||||| |||||||| |
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| T |
10020638 |
caagtctctaactacaaaccaggagacaaattccaaccaaaattctgtccaaatgagagccacaattatcccaatagcaaacatgttaatatatatatac |
10020737 |
T |
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| Q |
118 |
acacacatagggaagaataagctttttatttcttt |
152 |
Q |
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| T |
10020738 |
acatacataaggaagaataagatttttatttcttt |
10020772 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 140 - 203
Target Start/End: Original strand, 10013647 - 10013710
Alignment:
| Q |
140 |
tttttatttctttaaaaccattttttctctgaagaaaaatctcttggcaattttgatgttggtg |
203 |
Q |
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|||||||||||||||||||||||||||||||| ||||||| |||| |||||||||||||||||| |
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| T |
10013647 |
tttttatttctttaaaaccattttttctctgacgaaaaatttcttagcaattttgatgttggtg |
10013710 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 140 - 203
Target Start/End: Original strand, 10020788 - 10020851
Alignment:
| Q |
140 |
tttttatttctttaaaaccattttttctctgaagaaaaatctcttggcaattttgatgttggtg |
203 |
Q |
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|||||||||||||||||||||||||||||||| ||||||| |||| |||||||||||||||||| |
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| T |
10020788 |
tttttatttctttaaaaccattttttctctgacgaaaaatttcttagcaattttgatgttggtg |
10020851 |
T |
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