View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11827_low_6 (Length: 759)
Name: NF11827_low_6
Description: NF11827
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11827_low_6 |
 | |
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Alignment Details
Target: chr3 (Bit Score: 733; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 733; E-Value: 0
Query Start/End: Original strand, 1 - 741
Target Start/End: Complemental strand, 48384007 - 48383267
Alignment:
| Q |
1 |
cagaacatattgatggaagattgattcttgaattcgatcaaagaaagatttaacatggaaactcgatgccaaaacctttagcaacaatgtctttataacc |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48384007 |
cagaacatattgatggaagattgattcttgaattcgatcaaagaaagatttaacatggaaactcgatgccaaaacctttagcaacaatgtctttataacc |
48383908 |
T |
|
| Q |
101 |
cacaaaaatgctccaatgagaagggaaacaagagtccatgttatatcattcaaaatctttgcggccaatttagatcgatgggccccacgattgattaaaa |
200 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48383907 |
cacaaaaatgctccaatgagaagggaaacaagagtccatgttatatcattcaaaatctttgcggccaatttagatcgatgggccccacgattgattaaaa |
48383808 |
T |
|
| Q |
201 |
gcacccatgtgaggagaaccaaactgatccaaatgaaaacctggacacatttcttcaatccatggacaaaataaagtacttttttcttcaacaaaaagtt |
300 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
48383807 |
gcacccatgtgaggagaaccaaactgatccaaatgaaaacctggacacatttcttcaatccatgaacaaaataaagtacttttttcttcaacaaaaagtt |
48383708 |
T |
|
| Q |
301 |
catttcaatcaagaaaacaagaatgtgcatgaaccatttggtaactaacatgccacaaaatgtcaccatcacaagcatacaatacctccaaagccttaaa |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48383707 |
catttcaatcaagaaaacaagaatgtgcatgaaccatttggtaactaacatgccacaaaatgtcaccatcacaagcatacaatacctccaaagccttaaa |
48383608 |
T |
|
| Q |
401 |
ctccaaagctctgtccttctcagtttctcaaccgttaaactagccaacaagctacccgcgatgcatacaaaaacgaacaattcaatcaagacctttgttg |
500 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
48383607 |
ctccaaagctctgtccttctcagtttctcaaccgttaaactagccaacaagctacccgcgatgcatacaaaaacgaacaattcaatcaagacctttgttg |
48383508 |
T |
|
| Q |
501 |
ttagtctctttcgcttgcctctactggattcaactttcctgaaaatgatttcatcaagatcctcgccagcaggacctggagatgccatcaaaggtgttct |
600 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
48383507 |
ttagtctctttcgcttgcctctactggattcaactttcctgaaaatgatttcatcaagatcctcgccagcaggacctggagatgccatcaaaggtgttct |
48383408 |
T |
|
| Q |
601 |
aggagtgacgacagaagttatagaaacagaccgattcaccgttccagacttgttattcggtgaatgtgatgctttattaaatgtgttcctataaggtgaa |
700 |
Q |
| |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48383407 |
aggagtgactacagaagttatagaaacagaccgattcaccgttccagacttgttattcggtgaatgtgatgctttattaaatgtgttcctataaggtgaa |
48383308 |
T |
|
| Q |
701 |
ctaacagctaaatgttcttgcaaatttgaataagtaacatt |
741 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
48383307 |
ctaacagctaaatgttcttgcaaatttgaataagtaacatt |
48383267 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 413; E-Value: 0
Query Start/End: Original strand, 1 - 677
Target Start/End: Original strand, 48398134 - 48398810
Alignment:
| Q |
1 |
cagaacatattgatggaagattgattcttgaattcgatcaaagaaagatttaacatggaaactcgatgccaaaacctttagcaacaatgtctttataacc |
100 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||| ||| |
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| T |
48398134 |
cagaacatattgatggaagatcgattcttgaattcgatcaaagaaagatttgacatggaaactcgatgccaaaatctttagcaacaatgtctttatgacc |
48398233 |
T |
|
| Q |
101 |
cacaaaaatgctccaatgagaagggaaacaagagtccatgttatatcattcaaaatctttgcggccaatttagatcgatgggccccacgattgattaaaa |
200 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||| | ||| ||||||||| | ||||||||||||||| ||| | |||||||||||||||| |
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| T |
48398234 |
cacaaaaatgttccaatgagaagggaaacaagagtccatgttacaccatccaaaatcttcgtggccaatttagatcgctggactccacgattgattaaaa |
48398333 |
T |
|
| Q |
201 |
gcacccatgtgaggagaaccaaactgatccaaatgaaaacctggacacatttcttcaatccatggacaaaataaagtacttttttcttcaacaaaaagtt |
300 |
Q |
| |
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||||||| ||||||||||||||| |||||| |||||||||||| ||||||||||| |||||| ||||||||||| || ||||||||||| |||||||| |
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| T |
48398334 |
gcacccaagtgaggagaaccaaagcaatccaagtgaaaacctggatacatttcttcagtccatgaacaaaataaagcacctttttcttcaataaaaagtt |
48398433 |
T |
|
| Q |
301 |
catttcaatcaagaaaacaagaatgtgcatgaaccatttggtaactaacatgccacaaaatgtcaccatcacaagcatacaatacctccaaagccttaaa |
400 |
Q |
| |
|
|||||||||||||||||| | ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||| |
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|
| T |
48398434 |
catttcaatcaagaaaaccacaatgtgcgtgaaccatttggtaactaacatgccacaaaatgtcaccatcacaagcatacaccacctccaaagccccaaa |
48398533 |
T |
|
| Q |
401 |
ctccaaagctctgtccttctcagtttctcaaccgttaaactagccaacaagctacccgcgatgcatacaaaaacgaacaattcaatcaagacctttgttg |
500 |
Q |
| |
|
||||||| ||| |||||| | |||| |||||| ||||||||||||||||||||||||| |||||| ||||| |||||||| || ||||| ||||| || | |
|
|
| T |
48398534 |
ctccaaatctccgtcctttttagttcctcaactgttaaactagccaacaagctacccgtgatgcacacaaacacgaacaactcgatcaaaaccttagtag |
48398633 |
T |
|
| Q |
501 |
ttagtctctttcgcttgcctctactggattcaactttcctgaaaatgatttcatcaagatcctcgccagcaggacctggagatgccatcaaaggtgttct |
600 |
Q |
| |
|
|||||||||| ||||||||| |||| ||||||||||| || |||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
48398634 |
ttagtctcttacgcttgcctttactaaattcaactttcttgtaaatgatttcatcaggatcctcgccagcaggacctggagatgtcatcaaaggtgttct |
48398733 |
T |
|
| Q |
601 |
aggagtgacgacagaagttatagaaacagaccgattcaccgttccagacttgttattcggtgaatgtgatgctttat |
677 |
Q |
| |
|
|||||||||||||||||| || ||||| | | || || |||||| ||||||||||||||| |||||||||||| |
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|
| T |
48398734 |
aggagtgacgacagaagtaatcgaaacggttctataaactgttccatgtttgttattcggtgaacgtgatgctttat |
48398810 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 2 - 603
Target Start/End: Complemental strand, 48364393 - 48363789
Alignment:
| Q |
2 |
agaacatattgatggaagattgattcttgaattcgatcaaagaaagatttaacatggaaactcgatgccaaaacctttagcaacaatgtctttataaccc |
101 |
Q |
| |
|
|||||||||||||| ||||| ||||||||||||||||||||||||||||| ||||||||| | |||||||||| | |||||||||||||||||||||||| |
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| T |
48364393 |
agaacatattgatgaaagatcgattcttgaattcgatcaaagaaagatttgacatggaaatttgatgccaaaatcattagcaacaatgtctttataaccc |
48364294 |
T |
|
| Q |
102 |
acaaaaatgctccaatgagaagggaaacaagagtccatgttatatcattcaaaatctttgcggccaatttagatcgatgggccccacgattgattaaaag |
201 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||| | ||||||| ||||||||||| ||| || | ||||||| ||||| |
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|
| T |
48364293 |
acaaaaatgctccaatgagaagggaaacaagagtccatgttacatcattcaaaaaccttgcggctaatttagatcgctggacctcgtgattgataaaaag |
48364194 |
T |
|
| Q |
202 |
cacccatgtgaggagaaccaaactgatccaaatgaaaacctggacacatttcttcaatccatggacaaaataaagtacttttttcttcaacaaaaagttc |
301 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||| || ||||||||||||||||||||| |
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|
| T |
48364193 |
tacccatgtaaggagaaccaaactgatccaaatgaaaacctggacacattgcttcaacccatggacaaaataaagcacctttttcttcaacaaaaagttc |
48364094 |
T |
|
| Q |
302 |
atttcaatcaagaaaacaagaatgtgcatgaaccatttggtaactaacatgccacaaaatgtcaccatcacaagcatacaatacctccaaagccttaaac |
401 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||| |||||||||||| ||||| |
|
|
| T |
48364093 |
atttcaatcaagaaaacaacaatgtgcatgaaccatttggtaactaacaagccaaaaaatgtcaccatcacaagcatacaccacctccaaagccctaaac |
48363994 |
T |
|
| Q |
402 |
tccaaagctctgtccttctcagtttctcaaccgttaaactagccaacaagctacccgcgatgcatacaaaaacgaacaattcaatcaagacctttgttgt |
501 |
Q |
| |
|
|||||| | | ||||| |||||| ||||| ||||| |||||||||||| |||| | | ||| ||||| | ||||||||| ||||| ||||| || | |
|
|
| T |
48363993 |
tccaaatatgtatccttttcagttcctcaattgttaagctagccaacaagacacccacaacgcacacaaacatgaacaattcgatcaaaaccttagtcgc |
48363894 |
T |
|
| Q |
502 |
tagtctctttcgcttgcctctactggattcaactttcctgaaaatgatttcatcaagatcctcgcc---agcaggacctggagatgccatcaaaggtgtt |
598 |
Q |
| |
|
||||||||| ||| | | |||| ||||||||||||| |||||| ||| ||| |||| || || || || ||||||||||||| | ||||||||| |
|
|
| T |
48363893 |
tagtctcttatgctgggatttactaaattcaactttcctataaatgacttcgtcaggatcttcaccggaagaagaacctggagatgcccttaaaggtgtt |
48363794 |
T |
|
| Q |
599 |
ctagg |
603 |
Q |
| |
|
||||| |
|
|
| T |
48363793 |
ctagg |
48363789 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 685 - 741
Target Start/End: Complemental strand, 48363779 - 48363723
Alignment:
| Q |
685 |
gttcctataaggtgaactaacagctaaatgttcttgcaaatttgaataagtaacatt |
741 |
Q |
| |
|
|||||||||||||||| |||||||| | ||||||||| |||||| | |||||||||| |
|
|
| T |
48363779 |
gttcctataaggtgaagtaacagctgattgttcttgcgaatttggacaagtaacatt |
48363723 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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