View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11828_high_1 (Length: 708)

Name: NF11828_high_1
Description: NF11828
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11828_high_1
NF11828_high_1
[»] chr4 (1 HSPs)
chr4 (1-686)||(43986793-43987479)


Alignment Details
Target: chr4 (Bit Score: 623; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 623; E-Value: 0
Query Start/End: Original strand, 1 - 686
Target Start/End: Original strand, 43986793 - 43987479
Alignment:
Q  1 agttaggaataatggaaccatggtctttaatttcgttgaggaaaattgaaattatagtaatttgacgtatagtttctcttgcgttacgtttttgtgttgg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43986793 agttaggaataatggaaccatggtctttaatttcgttgaggaaaattgaaattatagtaatttgacgtatagtttctcttgcgttacgtttttgtgttgg 43986892  T
Q  101 gaatatttgaggttggaaattggatatagtttgtgaaagattgattagagaagtgatgagtgttgtgggagatatgttttcgcaagggtgaaccgccggg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43986893 gaatatttgaggttggaaattggatatagtttgtgaaagattgattagagaagtgatgagtgttgtgggagatatgttttcgcaagggtgaaccgccggg 43986992  T
Q  201 aatgataggatacggcgatccctttgattagtaagatgagaactagtcattatttaattgaaacaaacaaattcataataatacactatactatagttgt 300  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||  | | || |||||||||||    
T  43986993 aatgataggatacggcgatccctttgattagtaagatgagtactagtcattattgaattgaaacaaacaaattcataatataataatacactatagttgt 43987092  T
Q  301 tttgttttgagttgagttgaatttggatagtgtaaggtaaggttatattataggaggaagagaaggacatgagcgtgtgttgttgctgactgtggaatat 400  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||    
T  43987093 tttgttttgagttgagttgaacttggatagtgtaaggtaaggttatattat---aggaagagaaggacatgagcgtgtgttgttgctgactgtggaatat 43987189  T
Q  401 agtggacacgtgttaagatatttggttgactaggatttagaggaaatgagtaggaactggggaagattcgttatggacacgtggaggattacggttgctg 500  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43987190 agtggacacgtgttaagatatttggttgactaggatttagaggaaatgagtaggaactggggaagattcgttatggacacgtggaggattacggttgctg 43987289  T
Q  501 taactaaatttatttatctgtttttgtggatttgtaaatgtaattggg----ggaaggaaggaggagtgaggaaaagatttgaaatgatgatggattatg 596  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  43987290 taactaaatttatttatctgtttttgtggatttgtaaatgtaattgggggaaggaaggaaggaggagtgaggaaaagatttgaaatgatgatggattatg 43987389  T
Q  597 ggtccctcttggccgacattacaggtggagttattgtgtattgacgtgtgtatctggaaatttgatgttgctgtctatcaagctgctgac 686  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  43987390 ggtccctcttggccgacattacaggtggagttattgtgtattgacgtgtgtatctggaaatttgatgttgctgtctatcaagcttctgac 43987479  T

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