View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11828_high_10 (Length: 449)

Name: NF11828_high_10
Description: NF11828
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11828_high_10
NF11828_high_10
[»] chr5 (21 HSPs)
chr5 (348-433)||(38553633-38553718)
chr5 (106-149)||(5271848-5271891)
chr5 (110-147)||(19459766-19459803)
chr5 (21-52)||(4902812-4902843)
chr5 (106-145)||(37687921-37687960)
chr5 (20-57)||(1265949-1265986)
chr5 (20-57)||(6673228-6673265)
chr5 (20-57)||(9828393-9828430)
chr5 (20-57)||(13660861-13660898)
chr5 (20-57)||(14913648-14913685)
chr5 (20-57)||(16127259-16127296)
chr5 (20-57)||(22527692-22527729)
chr5 (20-57)||(26894873-26894910)
chr5 (110-147)||(29930835-29930872)
chr5 (20-57)||(32147294-32147331)
chr5 (24-57)||(32147555-32147588)
chr5 (20-57)||(40004409-40004446)
chr5 (20-57)||(41641095-41641132)
chr5 (21-57)||(7951562-7951598)
chr5 (21-57)||(32964133-32964169)
chr5 (21-57)||(34662204-34662240)
[»] chr8 (25 HSPs)
chr8 (106-147)||(36396665-36396706)
chr8 (106-147)||(43141267-43141309)
chr8 (106-147)||(6893864-6893905)
chr8 (20-57)||(9035539-9035576)
chr8 (20-57)||(29598224-29598261)
chr8 (20-57)||(38878721-38878758)
chr8 (20-57)||(44251121-44251158)
chr8 (106-145)||(26802284-26802323)
chr8 (20-57)||(51095-51132)
chr8 (20-57)||(1774342-1774379)
chr8 (20-57)||(2944272-2944309)
chr8 (20-57)||(4631555-4631592)
chr8 (20-57)||(8251933-8251970)
chr8 (20-57)||(8951428-8951465)
chr8 (20-57)||(13153928-13153965)
chr8 (20-57)||(18754144-18754181)
chr8 (20-57)||(28192175-28192212)
chr8 (20-57)||(28572046-28572083)
chr8 (20-57)||(28579639-28579676)
chr8 (20-57)||(32675757-32675794)
chr8 (20-57)||(34568490-34568527)
chr8 (20-57)||(39029178-39029215)
chr8 (110-143)||(39333082-39333115)
chr8 (24-57)||(40741528-40741561)
chr8 (107-143)||(26991361-26991397)
[»] chr7 (28 HSPs)
chr7 (106-147)||(41161394-41161435)
chr7 (106-147)||(48176913-48176954)
chr7 (106-148)||(37087821-37087862)
chr7 (20-57)||(7449270-7449307)
chr7 (23-57)||(18113169-18113203)
chr7 (23-57)||(44510346-44510380)
chr7 (20-57)||(6387325-6387362)
chr7 (106-147)||(19738314-19738355)
chr7 (20-57)||(19920563-19920600)
chr7 (20-57)||(21295151-21295188)
chr7 (20-57)||(26255096-26255133)
chr7 (24-57)||(29176992-29177025)
chr7 (20-57)||(29286037-29286074)
chr7 (20-57)||(29643143-29643180)
chr7 (176-217)||(32228146-32228187)
chr7 (20-57)||(32814433-32814470)
chr7 (20-57)||(32872375-32872412)
chr7 (20-57)||(33858866-33858903)
chr7 (20-57)||(36698131-36698168)
chr7 (20-57)||(38858298-38858335)
chr7 (20-57)||(39197718-39197755)
chr7 (20-57)||(39871613-39871650)
chr7 (20-57)||(41026096-41026133)
chr7 (20-57)||(41252361-41252398)
chr7 (20-57)||(44547426-44547463)
chr7 (20-57)||(46415005-46415042)
chr7 (20-57)||(48521029-48521066)
chr7 (21-57)||(40300230-40300266)
[»] scaffold0571 (1 HSPs)
scaffold0571 (106-148)||(9425-9467)
[»] chr6 (13 HSPs)
chr6 (20-57)||(10195993-10196030)
chr6 (20-57)||(19097801-19097838)
chr6 (20-57)||(231105-231142)
chr6 (20-57)||(287414-287451)
chr6 (110-147)||(4295750-4295787)
chr6 (20-57)||(4844400-4844437)
chr6 (20-57)||(5457412-5457449)
chr6 (20-57)||(8743188-8743225)
chr6 (20-57)||(9388791-9388828)
chr6 (24-57)||(23397879-23397912)
chr6 (20-57)||(30248647-30248684)
chr6 (20-57)||(33487833-33487870)
chr6 (20-57)||(34301832-34301869)
[»] chr4 (35 HSPs)
chr4 (106-147)||(3977652-3977693)
chr4 (111-144)||(7763972-7764005)
chr4 (106-147)||(27531091-27531132)
chr4 (20-57)||(52870644-52870681)
chr4 (112-148)||(53258631-53258667)
chr4 (106-144)||(7784057-7784095)
chr4 (23-57)||(49228721-49228755)
chr4 (20-54)||(50424854-50424888)
chr4 (20-57)||(1859144-1859181)
chr4 (20-57)||(4035825-4035862)
chr4 (20-57)||(5375557-5375594)
chr4 (24-57)||(5743399-5743432)
chr4 (20-57)||(5743659-5743696)
chr4 (20-57)||(9328240-9328277)
chr4 (106-147)||(11327477-11327518)
chr4 (20-57)||(17339078-17339115)
chr4 (106-147)||(19410938-19410979)
chr4 (20-57)||(25708678-25708715)
chr4 (20-57)||(30771528-30771565)
chr4 (20-57)||(32032993-32033030)
chr4 (20-57)||(33413518-33413555)
chr4 (106-147)||(33634599-33634640)
chr4 (20-57)||(34273219-34273256)
chr4 (20-57)||(36990914-36990951)
chr4 (24-57)||(39144668-39144701)
chr4 (20-57)||(41191628-41191665)
chr4 (20-57)||(44294789-44294826)
chr4 (20-57)||(45742806-45742843)
chr4 (20-57)||(47806860-47806897)
chr4 (20-57)||(50352064-50352101)
chr4 (20-57)||(50533884-50533921)
chr4 (20-57)||(52977982-52978019)
chr4 (20-57)||(55632259-55632296)
chr4 (112-148)||(21295137-21295173)
chr4 (21-57)||(26626003-26626039)
[»] chr3 (33 HSPs)
chr3 (106-147)||(11149982-11150023)
chr3 (20-57)||(12683182-12683219)
chr3 (106-147)||(36841322-36841363)
chr3 (115-148)||(46250039-46250072)
chr3 (20-57)||(50647944-50647981)
chr3 (20-57)||(53361855-53361892)
chr3 (112-148)||(4128199-4128235)
chr3 (106-147)||(28404956-28405000)
chr3 (20-57)||(7181350-7181387)
chr3 (20-57)||(9499497-9499534)
chr3 (20-57)||(10220933-10220970)
chr3 (20-57)||(12050392-12050429)
chr3 (20-57)||(14428610-14428647)
chr3 (20-57)||(16435236-16435273)
chr3 (20-57)||(17699031-17699068)
chr3 (20-57)||(21756486-21756523)
chr3 (20-57)||(22103929-22103966)
chr3 (106-147)||(23605998-23606039)
chr3 (20-57)||(23700785-23700822)
chr3 (20-57)||(23719240-23719277)
chr3 (20-57)||(23737696-23737733)
chr3 (20-57)||(25149122-25149159)
chr3 (20-57)||(26593765-26593802)
chr3 (20-57)||(35868083-35868120)
chr3 (20-57)||(37728713-37728750)
chr3 (20-57)||(43868103-43868140)
chr3 (20-57)||(44543782-44543819)
chr3 (20-57)||(45252773-45252810)
chr3 (20-57)||(46049986-46050023)
chr3 (20-57)||(51284062-51284099)
chr3 (21-57)||(4024052-4024088)
chr3 (106-138)||(32959245-32959277)
chr3 (20-52)||(33976508-33976540)
[»] chr1 (27 HSPs)
chr1 (20-57)||(14171542-14171579)
chr1 (106-147)||(33299598-33299639)
chr1 (110-149)||(7412107-7412146)
chr1 (106-145)||(35726446-35726485)
chr1 (20-57)||(943637-943674)
chr1 (20-57)||(1039381-1039418)
chr1 (20-57)||(1046287-1046324)
chr1 (20-57)||(4102714-4102751)
chr1 (20-57)||(11741397-11741434)
chr1 (20-57)||(15811232-15811269)
chr1 (106-147)||(18341058-18341099)
chr1 (20-57)||(23541979-23542016)
chr1 (20-57)||(30290265-30290302)
chr1 (20-57)||(36694854-36694891)
chr1 (20-57)||(36710955-36710992)
chr1 (20-57)||(37951949-37951986)
chr1 (20-57)||(39363194-39363231)
chr1 (20-57)||(39497433-39497470)
chr1 (20-57)||(44649629-44649666)
chr1 (20-57)||(45039412-45039449)
chr1 (20-57)||(46075867-46075904)
chr1 (106-147)||(47684827-47684868)
chr1 (20-57)||(49907021-49907058)
chr1 (20-57)||(50008483-50008520)
chr1 (20-57)||(50937779-50937816)
chr1 (20-57)||(52431174-52431211)
chr1 (20-56)||(30289862-30289898)
[»] chr2 (21 HSPs)
chr2 (106-145)||(18209556-18209595)
chr2 (106-141)||(27577939-27577974)
chr2 (110-148)||(11476152-11476190)
chr2 (107-145)||(31510328-31510366)
chr2 (112-146)||(33259832-33259866)
chr2 (20-57)||(2438225-2438262)
chr2 (20-57)||(5664638-5664675)
chr2 (20-57)||(7491844-7491881)
chr2 (20-57)||(8716892-8716929)
chr2 (20-57)||(11201683-11201720)
chr2 (20-57)||(17408294-17408331)
chr2 (20-57)||(20252210-20252247)
chr2 (106-147)||(21501412-21501453)
chr2 (20-57)||(25624733-25624770)
chr2 (20-57)||(27560206-27560243)
chr2 (20-57)||(34062665-34062702)
chr2 (20-57)||(34883848-34883885)
chr2 (20-57)||(36131028-36131065)
chr2 (20-57)||(37229440-37229477)
chr2 (20-57)||(40607702-40607739)
chr2 (20-57)||(41450516-41450553)
[»] scaffold0002 (1 HSPs)
scaffold0002 (23-57)||(355042-355076)
[»] scaffold0604 (1 HSPs)
scaffold0604 (20-57)||(3782-3819)
[»] scaffold0122 (1 HSPs)
scaffold0122 (20-57)||(12065-12102)
[»] scaffold0029 (1 HSPs)
scaffold0029 (20-57)||(51682-51719)
[»] scaffold0025 (1 HSPs)
scaffold0025 (20-57)||(65637-65674)
[»] scaffold0012 (1 HSPs)
scaffold0012 (20-57)||(47640-47677)
[»] scaffold0008 (1 HSPs)
scaffold0008 (20-57)||(259122-259159)
[»] scaffold0004 (1 HSPs)
scaffold0004 (110-147)||(337389-337426)


Alignment Details
Target: chr5 (Bit Score: 82; Significance: 1e-38; HSPs: 21)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 348 - 433
Target Start/End: Original strand, 38553633 - 38553718
Alignment:
Q  348 acctgtttgatgttgtgttcttgaacagcaaagatagcaaggttatcgatctcaacactgttctgtgtatattccacctcagtact 433  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  38553633 acctgtttgatgttgtgttcttgaacagcaaagatagcaaggttatctatctcaacactgttctgtgtatattccacctcagtact 38553718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 106 - 149
Target Start/End: Complemental strand, 5271891 - 5271848
Alignment:
Q  106 aaatggatttttatgggtagtaggcaaacaaaaataacttcaaa 149  Q
    |||||||||||||| ||| |||||||||||||||||||||||||    
T  5271891 aaatggatttttataggttgtaggcaaacaaaaataacttcaaa 5271848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 110 - 147
Target Start/End: Original strand, 19459766 - 19459803
Alignment:
Q  110 ggatttttatgggtagtaggcaaacaaaaataacttca 147  Q
    |||||||||||||| |||||||||||||||||||||||    
T  19459766 ggatttttatgggttgtaggcaaacaaaaataacttca 19459803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 21 - 52
Target Start/End: Complemental strand, 4902843 - 4902812
Alignment:
Q  21 tctcaaaatggtcttataattagagacggagg 52  Q
    ||||||||||||||||||||||||||||||||    
T  4902843 tctcaaaatggtcttataattagagacggagg 4902812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 106 - 145
Target Start/End: Complemental strand, 37687960 - 37687921
Alignment:
Q  106 aaatggatttttatgggtagtaggcaaacaaaaataactt 145  Q
    ||||||||||||||||||||||| ||||||||| ||||||    
T  37687960 aaatggatttttatgggtagtagacaaacaaaattaactt 37687921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 57
Target Start/End: Complemental strand, 1265986 - 1265949
Alignment:
Q  20 ttctcaaaatggtcttataattagagacggagggagta 57  Q
    ||||||||| |||||||||||||| |||||||||||||    
T  1265986 ttctcaaaagggtcttataattagggacggagggagta 1265949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 57
Target Start/End: Original strand, 6673228 - 6673265
Alignment:
Q  20 ttctcaaaatggtcttataattagagacggagggagta 57  Q
    ||||||||| |||||||||||||| |||||||||||||    
T  6673228 ttctcaaaagggtcttataattagggacggagggagta 6673265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 57
Target Start/End: Complemental strand, 9828430 - 9828393
Alignment:
Q  20 ttctcaaaatggtcttataattagagacggagggagta 57  Q
    ||||||||| |||||||||||||| |||||||||||||    
T  9828430 ttctcaaaagggtcttataattagggacggagggagta 9828393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 57
Target Start/End: Complemental strand, 13660898 - 13660861
Alignment:
Q  20 ttctcaaaatggtcttataattagagacggagggagta 57  Q
    ||||||||| | ||||||||||||||||||||||||||    
T  13660898 ttctcaaaaggatcttataattagagacggagggagta 13660861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 57
Target Start/End: Complemental strand, 14913685 - 14913648
Alignment:
Q  20 ttctcaaaatggtcttataattagagacggagggagta 57  Q
    ||||||||| |||||||||||||| |||||||||||||    
T  14913685 ttctcaaaagggtcttataattagggacggagggagta 14913648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 57
Target Start/End: Complemental strand, 16127296 - 16127259
Alignment:
Q  20 ttctcaaaatggtcttataattagagacggagggagta 57  Q
    ||||||||| |||||||||||||| |||||||||||||    
T  16127296 ttctcaaaagggtcttataattagggacggagggagta 16127259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 57
Target Start/End: Complemental strand, 22527729 - 22527692
Alignment:
Q  20 ttctcaaaatggtcttataattagagacggagggagta 57  Q
    ||||||||| |||||||||||||| |||||||||||||    
T  22527729 ttctcaaaagggtcttataattagggacggagggagta 22527692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 57
Target Start/End: Original strand, 26894873 - 26894910
Alignment:
Q  20 ttctcaaaatggtcttataattagagacggagggagta 57  Q
    ||||||||| |||||||||||||| |||||||||||||    
T  26894873 ttctcaaaagggtcttataattagggacggagggagta 26894910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 110 - 147
Target Start/End: Original strand, 29930835 - 29930872
Alignment:
Q  110 ggatttttatgggtagtaggcaaacaaaaataacttca 147  Q
    |||||||||||| ||||||||||||| |||||||||||    
T  29930835 ggatttttatggatagtaggcaaacacaaataacttca 29930872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 57
Target Start/End: Complemental strand, 32147331 - 32147294
Alignment:
Q  20 ttctcaaaatggtcttataattagagacggagggagta 57  Q
    ||||||||| |||||||||||||| |||||||||||||    
T  32147331 ttctcaaaaaggtcttataattagggacggagggagta 32147294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 57
Target Start/End: Original strand, 32147555 - 32147588
Alignment:
Q  24 caaaatggtcttataattagagacggagggagta 57  Q
    ||||| ||||||||||||||||||||||||||||    
T  32147555 caaaagggtcttataattagagacggagggagta 32147588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 57
Target Start/End: Original strand, 40004409 - 40004446
Alignment:
Q  20 ttctcaaaatggtcttataattagagacggagggagta 57  Q
    ||||||||| |||||||||||||| |||||||||||||    
T  40004409 ttctcaaaagggtcttataattagggacggagggagta 40004446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 57
Target Start/End: Complemental strand, 41641132 - 41641095
Alignment:
Q  20 ttctcaaaatggtcttataattagagacggagggagta 57  Q
    ||||||||||| |||||||||||| |||||||||||||    
T  41641132 ttctcaaaatgatcttataattagggacggagggagta 41641095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 21 - 57
Target Start/End: Complemental strand, 7951598 - 7951562
Alignment:
Q  21 tctcaaaatggtcttataattagagacggagggagta 57  Q
    |||||||| |||||||||||||| |||||||||||||    
T  7951598 tctcaaaagggtcttataattagggacggagggagta 7951562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 21 - 57
Target Start/End: Complemental strand, 32964169 - 32964133
Alignment:
Q  21 tctcaaaatggtcttataattagagacggagggagta 57  Q
    ||||||||||||||||||||||| |||||||| ||||    
T  32964169 tctcaaaatggtcttataattagggacggaggtagta 32964133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 21 - 57
Target Start/End: Complemental strand, 34662240 - 34662204
Alignment:
Q  21 tctcaaaatggtcttataattagagacggagggagta 57  Q
    |||||||| |||||||||||||| |||||||||||||    
T  34662240 tctcaaaagggtcttataattagggacggagggagta 34662204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000003; HSPs: 25)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 106 - 147
Target Start/End: Complemental strand, 36396706 - 36396665
Alignment:
Q  106 aaatggatttttatgggtagtaggcaaacaaaaataacttca 147  Q
    |||||||||||||| |||||||||||||||||||||||||||    
T  36396706 aaatggatttttataggtagtaggcaaacaaaaataacttca 36396665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 106 - 147
Target Start/End: Original strand, 43141267 - 43141309
Alignment:
Q  106 aaatggatttttatggg-tagtaggcaaacaaaaataacttca 147  Q
    ||||||||||||||||| |||||||||||||||||||||||||    
T  43141267 aaatggatttttatggggtagtaggcaaacaaaaataacttca 43141309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 106 - 147
Target Start/End: Original strand, 6893864 - 6893905
Alignment:
Q  106 aaatggatttttatgggtagtaggcaaacaaaaataacttca 147  Q
    |||||||||||||||| |||||| ||||||||||||||||||    
T  6893864 aaatggatttttatggatagtagacaaacaaaaataacttca 6893905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 20 - 57
Target Start/End: Original strand, 9035539 - 9035576
Alignment:
Q  20 ttctcaaaatggtcttataattagagacggagggagta 57  Q
    |||||||||||||||||||||||| |||||||||||||    
T  9035539 ttctcaaaatggtcttataattagggacggagggagta 9035576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 20 - 57
Target Start/End: Complemental strand, 29598261 - 29598224
Alignment:
Q  20 ttctcaaaatggtcttataattagagacggagggagta 57  Q
    ||||||||| ||||||||||||||||||||||||||||    
T  29598261 ttctcaaaagggtcttataattagagacggagggagta 29598224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 20 - 57
Target Start/End: Complemental strand, 38878758 - 38878721
Alignment:
Q  20 ttctcaaaatggtcttataattagagacggagggagta 57  Q
    ||||||||| ||||||||||||||||||||||||||||    
T  38878758 ttctcaaaagggtcttataattagagacggagggagta 38878721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 20 - 57
Target Start/End: Original strand, 44251121 - 44251158
Alignment:
Q  20 ttctcaaaatggtcttataattagagacggagggagta 57  Q
    |||||||||||||||||||||||| |||||||||||||    
T  44251121 ttctcaaaatggtcttataattagggacggagggagta 44251158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 106 - 145
Target Start/End: Original strand, 26802284 - 26802323
Alignment:
Q  106 aaatggatttttatgggtagtaggcaaacaaaaataactt 145  Q
    ||||| |||||||||| |||||||||||||||||||||||    
T  26802284 aaatgaatttttatggatagtaggcaaacaaaaataactt 26802323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 57
Target Start/End: Original strand, 51095 - 51132
Alignment:
Q  20 ttctcaaaatggtcttataattagagacggagggagta 57  Q
    ||||||||| |||||||||||||| |||||||||||||    
T  51095 ttctcaaaagggtcttataattagggacggagggagta 51132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 57
Target Start/End: Complemental strand, 1774379 - 1774342
Alignment:
Q  20 ttctcaaaatggtcttataattagagacggagggagta 57  Q
    ||||||||| |||||||||||||| |||||||||||||    
T  1774379 ttctcaaaagggtcttataattagggacggagggagta 1774342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 57
Target Start/End: Original strand, 2944272 - 2944309
Alignment:
Q  20 ttctcaaaatggtcttataattagagacggagggagta 57  Q
    ||||||||| |||||||||||||| |||||||||||||    
T  2944272 ttctcaaaagggtcttataattagggacggagggagta 2944309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 57
Target Start/End: Original strand, 4631555 - 4631592
Alignment:
Q  20 ttctcaaaatggtcttataattagagacggagggagta 57  Q
    |||||||||||||||||||||||| |||||| ||||||    
T  4631555 ttctcaaaatggtcttataattagggacggatggagta 4631592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 57
Target Start/End: Original strand, 8251933 - 8251970
Alignment:
Q  20 ttctcaaaatggtcttataattagagacggagggagta 57  Q
    ||||||||| |||||||||||||| |||||||||||||    
T  8251933 ttctcaaaagggtcttataattagggacggagggagta 8251970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 57
Target Start/End: Original strand, 8951428 - 8951465
Alignment:
Q  20 ttctcaaaatggtcttataattagagacggagggagta 57  Q
    ||||||||| |||||||||||||| |||||||||||||    
T  8951428 ttctcaaaagggtcttataattagggacggagggagta 8951465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 57
Target Start/End: Complemental strand, 13153965 - 13153928
Alignment:
Q  20 ttctcaaaatggtcttataattagagacggagggagta 57  Q
    ||||||||| |||||||||||||| |||||||||||||    
T  13153965 ttctcaaaagggtcttataattagggacggagggagta 13153928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 57
Target Start/End: Complemental strand, 18754181 - 18754144
Alignment:
Q  20 ttctcaaaatggtcttataattagagacggagggagta 57  Q
    ||||||||| |||||||||||||| |||||||||||||    
T  18754181 ttctcaaaagggtcttataattagggacggagggagta 18754144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 57
Target Start/End: Original strand, 28192175 - 28192212
Alignment:
Q  20 ttctcaaaatggtcttataattagagacggagggagta 57  Q
    ||||||||| |||||||||||||| |||||||||||||    
T  28192175 ttctcaaaagggtcttataattagggacggagggagta 28192212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 57
Target Start/End: Complemental strand, 28572083 - 28572046
Alignment:
Q  20 ttctcaaaatggtcttataattagagacggagggagta 57  Q
    ||||||||| |||||||||||||| |||||||||||||    
T  28572083 ttctcaaaagggtcttataattagggacggagggagta 28572046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 57
Target Start/End: Complemental strand, 28579676 - 28579639
Alignment:
Q  20 ttctcaaaatggtcttataattagagacggagggagta 57  Q
    ||||||||| |||||||||||||| |||||||||||||    
T  28579676 ttctcaaaagggtcttataattagggacggagggagta 28579639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 57
Target Start/End: Original strand, 32675757 - 32675794
Alignment:
Q  20 ttctcaaaatggtcttataattagagacggagggagta 57  Q
    ||||||||| |||||||||||||| |||||||||||||    
T  32675757 ttctcaaaagggtcttataattagggacggagggagta 32675794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 57
Target Start/End: Complemental strand, 34568527 - 34568490
Alignment:
Q  20 ttctcaaaatggtcttataattagagacggagggagta 57  Q
    ||||||||| |||||||||||||| |||||||||||||    
T  34568527 ttctcaaaagggtcttataattagggacggagggagta 34568490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 57
Target Start/End: Complemental strand, 39029215 - 39029178
Alignment:
Q  20 ttctcaaaatggtcttataattagagacggagggagta 57  Q
    ||||||||| |||||||||||||| |||||||||||||    
T  39029215 ttctcaaaagggtcttataattagggacggagggagta 39029178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 110 - 143
Target Start/End: Original strand, 39333082 - 39333115
Alignment:
Q  110 ggatttttatgggtagtaggcaaacaaaaataac 143  Q
    ||||||||||||| ||||||||||||||||||||    
T  39333082 ggatttttatgggcagtaggcaaacaaaaataac 39333115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 57
Target Start/End: Original strand, 40741528 - 40741561
Alignment:
Q  24 caaaatggtcttataattagagacggagggagta 57  Q
    |||||||||||||||||||| |||||||||||||    
T  40741528 caaaatggtcttataattagggacggagggagta 40741561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 107 - 143
Target Start/End: Original strand, 26991361 - 26991397
Alignment:
Q  107 aatggatttttatgggtagtaggcaaacaaaaataac 143  Q
    ||||| ||||||||||||||||||||| |||||||||    
T  26991361 aatgggtttttatgggtagtaggcaaataaaaataac 26991397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000003; HSPs: 28)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 106 - 147
Target Start/End: Original strand, 41161394 - 41161435
Alignment:
Q  106 aaatggatttttatgggtagtaggcaaacaaaaataacttca 147  Q
    ||||||||||||||||||||||| ||||||||||||||||||    
T  41161394 aaatggatttttatgggtagtagacaaacaaaaataacttca 41161435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 106 - 147
Target Start/End: Complemental strand, 48176954 - 48176913
Alignment:
Q  106 aaatggatttttatgggtagtaggcaaacaaaaataacttca 147  Q
    ||||||||||||||| ||||||||||||||||||||||||||    
T  48176954 aaatggatttttatgagtagtaggcaaacaaaaataacttca 48176913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 106 - 148
Target Start/End: Original strand, 37087821 - 37087862
Alignment:
Q  106 aaatggatttttatgggtagtaggcaaacaaaaataacttcaa 148  Q
    ||||||||||||||||||| |||||||||||||||||||||||    
T  37087821 aaatggatttttatgggta-taggcaaacaaaaataacttcaa 37087862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 20 - 57
Target Start/End: Complemental strand, 7449307 - 7449270
Alignment:
Q  20 ttctcaaaatggtcttataattagagacggagggagta 57  Q
    |||||||||||||||||||||||| |||||||||||||    
T  7449307 ttctcaaaatggtcttataattagggacggagggagta 7449270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 23 - 57
Target Start/End: Original strand, 18113169 - 18113203
Alignment:
Q  23 tcaaaatggtcttataattagagacggagggagta 57  Q
    |||||| ||||||||||||||||||||||||||||    
T  18113169 tcaaaagggtcttataattagagacggagggagta 18113203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 23 - 57
Target Start/End: Original strand, 44510346 - 44510380
Alignment:
Q  23 tcaaaatggtcttataattagagacggagggagta 57  Q
    ||||||||||||||||||||| |||||||||||||    
T  44510346 tcaaaatggtcttataattagggacggagggagta 44510380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 57
Target Start/End: Complemental strand, 6387362 - 6387325
Alignment:
Q  20 ttctcaaaatggtcttataattagagacggagggagta 57  Q
    |||||||||  |||||||||||||||||||||||||||    
T  6387362 ttctcaaaagagtcttataattagagacggagggagta 6387325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 106 - 147
Target Start/End: Complemental strand, 19738355 - 19738314
Alignment:
Q  106 aaatggatttttatgggtagtaggcaaacaaaaataacttca 147  Q
    ||||||||||||||||||| |||||||| ||||| |||||||    
T  19738355 aaatggatttttatgggtaataggcaaataaaaaaaacttca 19738314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 57
Target Start/End: Complemental strand, 19920600 - 19920563
Alignment:
Q  20 ttctcaaaatggtcttataattagagacggagggagta 57  Q
    ||||||||| |||||||||||||| |||||||||||||    
T  19920600 ttctcaaaagggtcttataattagggacggagggagta 19920563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 57
Target Start/End: Complemental strand, 21295188 - 21295151
Alignment:
Q  20 ttctcaaaatggtcttataattagagacggagggagta 57  Q
    ||||||||| |||||||||||||| |||||||||||||    
T  21295188 ttctcaaaagggtcttataattagggacggagggagta 21295151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 57
Target Start/End: Complemental strand, 26255133 - 26255096
Alignment:
Q  20 ttctcaaaatggtcttataattagagacggagggagta 57  Q
    ||||||||| |||||||||||||| |||||||||||||    
T  26255133 ttctcaaaagggtcttataattagggacggagggagta 26255096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 57
Target Start/End: Complemental strand, 29177025 - 29176992
Alignment:
Q  24 caaaatggtcttataattagagacggagggagta 57  Q
    ||||| ||||||||||||||||||||||||||||    
T  29177025 caaaagggtcttataattagagacggagggagta 29176992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 57
Target Start/End: Original strand, 29286037 - 29286074
Alignment:
Q  20 ttctcaaaatggtcttataattagagacggagggagta 57  Q
    ||||||||| |||||||||||||| |||||||||||||    
T  29286037 ttctcaaaagggtcttataattagggacggagggagta 29286074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 57
Target Start/End: Original strand, 29643143 - 29643180
Alignment:
Q  20 ttctcaaaatggtcttataattagagacggagggagta 57  Q
    ||||||||| ||||||||||||||||| ||||||||||    
T  29643143 ttctcaaaagggtcttataattagagatggagggagta 29643180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 176 - 217
Target Start/End: Complemental strand, 32228187 - 32228146
Alignment:
Q  176 tctctagataaaaatctctaaattctttaaacataaaatcta 217  Q
    |||||| | ||||||||||||||||||| |||||||||||||    
T  32228187 tctctataaaaaaatctctaaattcttttaacataaaatcta 32228146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 57
Target Start/End: Complemental strand, 32814470 - 32814433
Alignment:
Q  20 ttctcaaaatggtcttataattagagacggagggagta 57  Q
    ||||||||| |||||||||||||| |||||||||||||    
T  32814470 ttctcaaaagggtcttataattagggacggagggagta 32814433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 57
Target Start/End: Original strand, 32872375 - 32872412
Alignment:
Q  20 ttctcaaaatggtcttataattagagacggagggagta 57  Q
    ||||||||| |||||||||||||| |||||||||||||    
T  32872375 ttctcaaaagggtcttataattagggacggagggagta 32872412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 57
Target Start/End: Original strand, 33858866 - 33858903
Alignment:
Q  20 ttctcaaaatggtcttataattagagacggagggagta 57  Q
    ||||||||| |||||||||||||| |||||||||||||    
T  33858866 ttctcaaaagggtcttataattagggacggagggagta 33858903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 57
Target Start/End: Original strand, 36698131 - 36698168
Alignment:
Q  20 ttctcaaaatggtcttataattagagacggagggagta 57  Q
    ||||||||| |||||||||||||| |||||||||||||    
T  36698131 ttctcaaaagggtcttataattagggacggagggagta 36698168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 57
Target Start/End: Complemental strand, 38858335 - 38858298
Alignment:
Q  20 ttctcaaaatggtcttataattagagacggagggagta 57  Q
    ||||||||| |||||||||||||| |||||||||||||    
T  38858335 ttctcaaaagggtcttataattagggacggagggagta 38858298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 57
Target Start/End: Complemental strand, 39197755 - 39197718
Alignment:
Q  20 ttctcaaaatggtcttataattagagacggagggagta 57  Q
    ||||||||| |||||||||||||| |||||||||||||    
T  39197755 ttctcaaaagggtcttataattagggacggagggagta 39197718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 57
Target Start/End: Original strand, 39871613 - 39871650
Alignment:
Q  20 ttctcaaaatggtcttataattagagacggagggagta 57  Q
    ||||||||| |||||||||||||| |||||||||||||    
T  39871613 ttctcaaaagggtcttataattagggacggagggagta 39871650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 57
Target Start/End: Original strand, 41026096 - 41026133
Alignment:
Q  20 ttctcaaaatggtcttataattagagacggagggagta 57  Q
    ||||||||| |||||||||||||| |||||||||||||    
T  41026096 ttctcaaaagggtcttataattagggacggagggagta 41026133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 57
Target Start/End: Original strand, 41252361 - 41252398
Alignment:
Q  20 ttctcaaaatggtcttataattagagacggagggagta 57  Q
    ||||||||| |||||||||||||| |||||||||||||    
T  41252361 ttctcaaaagggtcttataattagggacggagggagta 41252398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 57
Target Start/End: Complemental strand, 44547463 - 44547426
Alignment:
Q  20 ttctcaaaatggtcttataattagagacggagggagta 57  Q
    ||||||||| |||||||||||||| |||||||||||||    
T  44547463 ttctcaaaaaggtcttataattagggacggagggagta 44547426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 57
Target Start/End: Original strand, 46415005 - 46415042
Alignment:
Q  20 ttctcaaaatggtcttataattagagacggagggagta 57  Q
    |||||||||||||||||||||||| |||||||| ||||    
T  46415005 ttctcaaaatggtcttataattagggacggaggtagta 46415042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 57
Target Start/End: Complemental strand, 48521066 - 48521029
Alignment:
Q  20 ttctcaaaatggtcttataattagagacggagggagta 57  Q
    ||||||||| |||||||||||||| |||||||||||||    
T  48521066 ttctcaaaagggtcttataattagggacggagggagta 48521029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 21 - 57
Target Start/End: Complemental strand, 40300266 - 40300230
Alignment:
Q  21 tctcaaaatggtcttataattagagacggagggagta 57  Q
    |||||||| |||||||||||||| |||||||||||||    
T  40300266 tctcaaaagggtcttataattagggacggagggagta 40300230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0571 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0571
Description:

Target: scaffold0571; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 106 - 148
Target Start/End: Original strand, 9425 - 9467
Alignment:
Q  106 aaatggatttttatgggtagtaggcaaacaaaaataacttcaa 148  Q
    |||||||||||||||| ||||||| ||||||||||||||||||    
T  9425 aaatggatttttatggatagtaggtaaacaaaaataacttcaa 9467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000006; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 20 - 57
Target Start/End: Original strand, 10195993 - 10196030
Alignment:
Q  20 ttctcaaaatggtcttataattagagacggagggagta 57  Q
    ||||||||| ||||||||||||||||||||||||||||    
T  10195993 ttctcaaaagggtcttataattagagacggagggagta 10196030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 20 - 57
Target Start/End: Original strand, 19097801 - 19097838
Alignment:
Q  20 ttctcaaaatggtcttataattagagacggagggagta 57  Q
    ||||||||| ||||||||||||||||||||||||||||    
T  19097801 ttctcaaaagggtcttataattagagacggagggagta 19097838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 57
Target Start/End: Original strand, 231105 - 231142
Alignment:
Q  20 ttctcaaaatggtcttataattagagacggagggagta 57  Q
    ||||||||| |||||||||||||| |||||||||||||    
T  231105 ttctcaaaagggtcttataattagggacggagggagta 231142  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 57
Target Start/End: Original strand, 287414 - 287451
Alignment:
Q  20 ttctcaaaatggtcttataattagagacggagggagta 57  Q
    ||||||||| |||||||||||||| |||||||||||||    
T  287414 ttctcaaaaaggtcttataattagggacggagggagta 287451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 110 - 147
Target Start/End: Complemental strand, 4295787 - 4295750
Alignment:
Q  110 ggatttttatgggtagtaggcaaacaaaaataacttca 147  Q
    |||||||||| ||||||||||||| |||||||||||||    
T  4295787 ggatttttataggtagtaggcaaataaaaataacttca 4295750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 57
Target Start/End: Complemental strand, 4844437 - 4844400
Alignment:
Q  20 ttctcaaaatggtcttataattagagacggagggagta 57  Q
    ||||||||| |||||||||||||| |||||||||||||    
T  4844437 ttctcaaaagggtcttataattagggacggagggagta 4844400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 57
Target Start/End: Complemental strand, 5457449 - 5457412
Alignment:
Q  20 ttctcaaaatggtcttataattagagacggagggagta 57  Q
    ||||||||| |||||||||||||| |||||||||||||    
T  5457449 ttctcaaaaaggtcttataattagggacggagggagta 5457412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 57
Target Start/End: Complemental strand, 8743225 - 8743188
Alignment:
Q  20 ttctcaaaatggtcttataattagagacggagggagta 57  Q
    ||||||||| |||||||||||||| |||||||||||||    
T  8743225 ttctcaaaagggtcttataattagggacggagggagta 8743188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 57
Target Start/End: Original strand, 9388791 - 9388828
Alignment:
Q  20 ttctcaaaatggtcttataattagagacggagggagta 57  Q
    ||||||||| |||||||||||||| |||||||||||||    
T  9388791 ttctcaaaaaggtcttataattagggacggagggagta 9388828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 57
Target Start/End: Complemental strand, 23397912 - 23397879
Alignment:
Q  24 caaaatggtcttataattagagacggagggagta 57  Q
    |||||||||||||||||||| |||||||||||||    
T  23397912 caaaatggtcttataattagggacggagggagta 23397879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 57
Target Start/End: Complemental strand, 30248684 - 30248647
Alignment:
Q  20 ttctcaaaatggtcttataattagagacggagggagta 57  Q
    ||||||||| |||||||||||||| |||||||||||||    
T  30248684 ttctcaaaagggtcttataattagggacggagggagta 30248647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 57
Target Start/End: Complemental strand, 33487870 - 33487833
Alignment:
Q  20 ttctcaaaatggtcttataattagagacggagggagta 57  Q
    ||||||||| |||||||||||||| |||||||||||||    
T  33487870 ttctcaaaaaggtcttataattagggacggagggagta 33487833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 57
Target Start/End: Original strand, 34301832 - 34301869
Alignment:
Q  20 ttctcaaaatggtcttataattagagacggagggagta 57  Q
    ||||||||| |||||||||||||| |||||||||||||    
T  34301832 ttctcaaaagggtcttataattagggacggagggagta 34301869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000006; HSPs: 35)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 106 - 147
Target Start/End: Complemental strand, 3977693 - 3977652
Alignment:
Q  106 aaatggatttttatgggtagtaggcaaacaaaaataacttca 147  Q
    |||| ||||||||||||||||||||||||||||| |||||||    
T  3977693 aaatagatttttatgggtagtaggcaaacaaaaagaacttca 3977652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 111 - 144
Target Start/End: Complemental strand, 7764005 - 7763972
Alignment:
Q  111 gatttttatgggtagtaggcaaacaaaaataact 144  Q
    ||||||||||||||||||||||||||||||||||    
T  7764005 gatttttatgggtagtaggcaaacaaaaataact 7763972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 106 - 147
Target Start/End: Complemental strand, 27531132 - 27531091
Alignment:
Q  106 aaatggatttttatgggtagtaggcaaacaaaaataacttca 147  Q
    |||||||||||||| | |||||||||||||||||||||||||    
T  27531132 aaatggatttttatagctagtaggcaaacaaaaataacttca 27531091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 20 - 57
Target Start/End: Complemental strand, 52870681 - 52870644
Alignment:
Q  20 ttctcaaaatggtcttataattagagacggagggagta 57  Q
    ||||||||| ||||||||||||||||||||||||||||    
T  52870681 ttctcaaaagggtcttataattagagacggagggagta 52870644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 112 - 148
Target Start/End: Complemental strand, 53258667 - 53258631
Alignment:
Q  112 atttttatgggtagtaggcaaacaaaaataacttcaa 148  Q
    ||||||||||||||||| |||||||||||||||||||    
T  53258667 atttttatgggtagtagacaaacaaaaataacttcaa 53258631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 106 - 144
Target Start/End: Complemental strand, 7784095 - 7784057
Alignment:
Q  106 aaatggatttttatgggtagtaggcaaacaaaaataact 144  Q
    |||| |||||||||||||| |||||||||||||||||||    
T  7784095 aaatagatttttatgggtaataggcaaacaaaaataact 7784057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 23 - 57
Target Start/End: Original strand, 49228721 - 49228755
Alignment:
Q  23 tcaaaatggtcttataattagagacggagggagta 57  Q
    |||||| ||||||||||||||||||||||||||||    
T  49228721 tcaaaagggtcttataattagagacggagggagta 49228755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 20 - 54
Target Start/End: Original strand, 50424854 - 50424888
Alignment:
Q  20 ttctcaaaatggtcttataattagagacggaggga 54  Q
    ||||||||| |||||||||||||||||||||||||    
T  50424854 ttctcaaaagggtcttataattagagacggaggga 50424888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 57
Target Start/End: Complemental strand, 1859181 - 1859144
Alignment:
Q  20 ttctcaaaatggtcttataattagagacggagggagta 57  Q
    ||||||||| |||||||||||||| |||||||||||||    
T  1859181 ttctcaaaaaggtcttataattagggacggagggagta 1859144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 57
Target Start/End: Complemental strand, 4035862 - 4035825
Alignment:
Q  20 ttctcaaaatggtcttataattagagacggagggagta 57  Q
    ||||||||| |||||||||||||| |||||||||||||    
T  4035862 ttctcaaaagggtcttataattagggacggagggagta 4035825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 57
Target Start/End: Original strand, 5375557 - 5375594
Alignment:
Q  20 ttctcaaaatggtcttataattagagacggagggagta 57  Q
    ||||||||| |||||||||||||| |||||||||||||    
T  5375557 ttctcaaaagggtcttataattagggacggagggagta 5375594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 57
Target Start/End: Complemental strand, 5743432 - 5743399
Alignment:
Q  24 caaaatggtcttataattagagacggagggagta 57  Q
    |||||||||||||||||||| |||||||||||||    
T  5743432 caaaatggtcttataattagggacggagggagta 5743399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 57
Target Start/End: Original strand, 5743659 - 5743696
Alignment:
Q  20 ttctcaaaatggtcttataattagagacggagggagta 57  Q
    ||||||||| |||||||||||||| |||||||||||||    
T  5743659 ttctcaaaagggtcttataattagggacggagggagta 5743696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 57
Target Start/End: Original strand, 9328240 - 9328277
Alignment:
Q  20 ttctcaaaatggtcttataattagagacggagggagta 57  Q
    ||||||||| |||||||||||||| |||||||||||||    
T  9328240 ttctcaaaagggtcttataattagggacggagggagta 9328277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 106 - 147
Target Start/End: Original strand, 11327477 - 11327518
Alignment:
Q  106 aaatggatttttatgggtagtaggcaaacaaaaataacttca 147  Q
    |||||||||||  ||| |||||||||||||||||||||||||    
T  11327477 aaatggattttcctggatagtaggcaaacaaaaataacttca 11327518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 57
Target Start/End: Complemental strand, 17339115 - 17339078
Alignment:
Q  20 ttctcaaaatggtcttataattagagacggagggagta 57  Q
    ||||||||| ||||||||||||||||||||||| ||||    
T  17339115 ttctcaaaagggtcttataattagagacggaggtagta 17339078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 106 - 147
Target Start/End: Complemental strand, 19410979 - 19410938
Alignment:
Q  106 aaatggatttttatgggtagtaggcaaacaaaaataacttca 147  Q
    |||| |||||||||| |||||| |||||||||||||||||||    
T  19410979 aaattgatttttatgcgtagtaagcaaacaaaaataacttca 19410938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 57
Target Start/End: Original strand, 25708678 - 25708715
Alignment:
Q  20 ttctcaaaatggtcttataattagagacggagggagta 57  Q
    ||||||||| |||||||||||||| |||||||||||||    
T  25708678 ttctcaaaaaggtcttataattagggacggagggagta 25708715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 57
Target Start/End: Complemental strand, 30771565 - 30771528
Alignment:
Q  20 ttctcaaaatggtcttataattagagacggagggagta 57  Q
    ||||||||| |||||||||||||| |||||||||||||    
T  30771565 ttctcaaaagggtcttataattagggacggagggagta 30771528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 57
Target Start/End: Original strand, 32032993 - 32033030
Alignment:
Q  20 ttctcaaaatggtcttataattagagacggagggagta 57  Q
    ||||||||| |||||||||||||| |||||||||||||    
T  32032993 ttctcaaaagggtcttataattagggacggagggagta 32033030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 57
Target Start/End: Complemental strand, 33413555 - 33413518
Alignment:
Q  20 ttctcaaaatggtcttataattagagacggagggagta 57  Q
    ||||||||| |||||||||||||| |||||||||||||    
T  33413555 ttctcaaaagggtcttataattagggacggagggagta 33413518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 106 - 147
Target Start/End: Complemental strand, 33634640 - 33634599
Alignment:
Q  106 aaatggatttttatgggtagtaggcaaacaaaaataacttca 147  Q
    ||||||||||||||| | ||||| ||||||||||||||||||    
T  33634640 aaatggatttttatgagaagtagacaaacaaaaataacttca 33634599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 57
Target Start/End: Original strand, 34273219 - 34273256
Alignment:
Q  20 ttctcaaaatggtcttataattagagacggagggagta 57  Q
    ||||||||| |||||||||||||| |||||||||||||    
T  34273219 ttctcaaaagggtcttataattagggacggagggagta 34273256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 57
Target Start/End: Complemental strand, 36990951 - 36990914
Alignment:
Q  20 ttctcaaaatggtcttataattagagacggagggagta 57  Q
    ||||||||| ||||||||||||||||||||||| ||||    
T  36990951 ttctcaaaaaggtcttataattagagacggaggtagta 36990914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 57
Target Start/End: Original strand, 39144668 - 39144701
Alignment:
Q  24 caaaatggtcttataattagagacggagggagta 57  Q
    ||||| ||||||||||||||||||||||||||||    
T  39144668 caaaaaggtcttataattagagacggagggagta 39144701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 57
Target Start/End: Original strand, 41191628 - 41191665
Alignment:
Q  20 ttctcaaaatggtcttataattagagacggagggagta 57  Q
    ||||||||| ||||||||||||||||||||||| ||||    
T  41191628 ttctcaaaagggtcttataattagagacggaggtagta 41191665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 57
Target Start/End: Complemental strand, 44294826 - 44294789
Alignment:
Q  20 ttctcaaaatggtcttataattagagacggagggagta 57  Q
    ||||||||| |||||||||||||| |||||||||||||    
T  44294826 ttctcaaaagggtcttataattagggacggagggagta 44294789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 57
Target Start/End: Original strand, 45742806 - 45742843
Alignment:
Q  20 ttctcaaaatggtcttataattagagacggagggagta 57  Q
    ||||||||| |||||||||||||| |||||||||||||    
T  45742806 ttctcaaaagggtcttataattagggacggagggagta 45742843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 57
Target Start/End: Complemental strand, 47806897 - 47806860
Alignment:
Q  20 ttctcaaaatggtcttataattagagacggagggagta 57  Q
    ||||||||| |||||||||||||| |||||||||||||    
T  47806897 ttctcaaaagggtcttataattagggacggagggagta 47806860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 57
Target Start/End: Complemental strand, 50352101 - 50352064
Alignment:
Q  20 ttctcaaaatggtcttataattagagacggagggagta 57  Q
    ||||||||| | ||||||||||||||||||||||||||    
T  50352101 ttctcaaaaggatcttataattagagacggagggagta 50352064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 57
Target Start/End: Complemental strand, 50533921 - 50533884
Alignment:
Q  20 ttctcaaaatggtcttataattagagacggagggagta 57  Q
    ||||||||||| |||||||||||| |||||||||||||    
T  50533921 ttctcaaaatgatcttataattagggacggagggagta 50533884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 57
Target Start/End: Complemental strand, 52978019 - 52977982
Alignment:
Q  20 ttctcaaaatggtcttataattagagacggagggagta 57  Q
    ||||||||| |||||||||||||| |||||||||||||    
T  52978019 ttctcaaaagggtcttataattagggacggagggagta 52977982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 57
Target Start/End: Original strand, 55632259 - 55632296
Alignment:
Q  20 ttctcaaaatggtcttataattagagacggagggagta 57  Q
    ||||||||| | ||||||||||||||||||||||||||    
T  55632259 ttctcaaaaggatcttataattagagacggagggagta 55632296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 112 - 148
Target Start/End: Original strand, 21295137 - 21295173
Alignment:
Q  112 atttttatgggtagtaggcaaacaaaaataacttcaa 148  Q
    ||||||||||||| || ||||||||||||||||||||    
T  21295137 atttttatgggtaataagcaaacaaaaataacttcaa 21295173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 21 - 57
Target Start/End: Original strand, 26626003 - 26626039
Alignment:
Q  21 tctcaaaatggtcttataattagagacggagggagta 57  Q
    |||||||| |||||||||||||| |||||||||||||    
T  26626003 tctcaaaagggtcttataattagggacggagggagta 26626039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000006; HSPs: 33)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 106 - 147
Target Start/End: Complemental strand, 11150023 - 11149982
Alignment:
Q  106 aaatggatttttatgggtagtaggcaaacaaaaataacttca 147  Q
    |||||||||||||||| |||||||||||||||||||| ||||    
T  11150023 aaatggatttttatggttagtaggcaaacaaaaataatttca 11149982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 20 - 57
Target Start/End: Original strand, 12683182 - 12683219
Alignment:
Q  20 ttctcaaaatggtcttataattagagacggagggagta 57  Q
    |||||||||||||||||||||||| |||||||||||||    
T  12683182 ttctcaaaatggtcttataattagggacggagggagta 12683219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 106 - 147
Target Start/End: Complemental strand, 36841363 - 36841322
Alignment:
Q  106 aaatggatttttatgggtagtaggcaaacaaaaataacttca 147  Q
    ||||||||||| ||||||| ||||||||||||||||||||||    
T  36841363 aaatggattttcatgggtattaggcaaacaaaaataacttca 36841322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 115 - 148
Target Start/End: Complemental strand, 46250072 - 46250039
Alignment:
Q  115 tttatgggtagtaggcaaacaaaaataacttcaa 148  Q
    ||||||||||||||||||||||||||||||||||    
T  46250072 tttatgggtagtaggcaaacaaaaataacttcaa 46250039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 20 - 57
Target Start/End: Original strand, 50647944 - 50647981
Alignment:
Q  20 ttctcaaaatggtcttataattagagacggagggagta 57  Q
    ||||||||| ||||||||||||||||||||||||||||    
T  50647944 ttctcaaaagggtcttataattagagacggagggagta 50647981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 20 - 57
Target Start/End: Original strand, 53361855 - 53361892
Alignment:
Q  20 ttctcaaaatggtcttataattagagacggagggagta 57  Q
    |||||||||||||||||||||||| |||||||||||||    
T  53361855 ttctcaaaatggtcttataattagggacggagggagta 53361892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 112 - 148
Target Start/End: Original strand, 4128199 - 4128235
Alignment:
Q  112 atttttatgggtagtaggcaaacaaaaataacttcaa 148  Q
    ||||||||||||||||||||||| |||||||||||||    
T  4128199 atttttatgggtagtaggcaaaccaaaataacttcaa 4128235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 106 - 147
Target Start/End: Complemental strand, 28405000 - 28404956
Alignment:
Q  106 aaatggatttttatgggtagta---ggcaaacaaaaataacttca 147  Q
    ||||||||||||||||||||||   ||||||||||||||||||||    
T  28405000 aaatggatttttatgggtagtactaggcaaacaaaaataacttca 28404956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 57
Target Start/End: Complemental strand, 7181387 - 7181350
Alignment:
Q  20 ttctcaaaatggtcttataattagagacggagggagta 57  Q
    ||||||||| |||||||||||||| |||||||||||||    
T  7181387 ttctcaaaagggtcttataattagggacggagggagta 7181350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 57
Target Start/End: Original strand, 9499497 - 9499534
Alignment:
Q  20 ttctcaaaatggtcttataattagagacggagggagta 57  Q
    ||||||||| |||||||||||||| |||||||||||||    
T  9499497 ttctcaaaagggtcttataattagggacggagggagta 9499534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 57
Target Start/End: Complemental strand, 10220970 - 10220933
Alignment:
Q  20 ttctcaaaatggtcttataattagagacggagggagta 57  Q
    ||||||||| |||||||||||||| |||||||||||||    
T  10220970 ttctcaaaagggtcttataattagggacggagggagta 10220933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 57
Target Start/End: Original strand, 12050392 - 12050429
Alignment:
Q  20 ttctcaaaatggtcttataattagagacggagggagta 57  Q
    ||||||||| |||||||||||||| |||||||||||||    
T  12050392 ttctcaaaagggtcttataattagggacggagggagta 12050429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 57
Target Start/End: Complemental strand, 14428647 - 14428610
Alignment:
Q  20 ttctcaaaatggtcttataattagagacggagggagta 57  Q
    ||||||||| |||||||||||||| |||||||||||||    
T  14428647 ttctcaaaagggtcttataattagggacggagggagta 14428610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 57
Target Start/End: Original strand, 16435236 - 16435273
Alignment:
Q  20 ttctcaaaatggtcttataattagagacggagggagta 57  Q
    ||||||||| | ||||||||||||||||||||||||||    
T  16435236 ttctcaaaaggatcttataattagagacggagggagta 16435273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 57
Target Start/End: Original strand, 17699031 - 17699068
Alignment:
Q  20 ttctcaaaatggtcttataattagagacggagggagta 57  Q
    |||||||||||||||||||||||| |||||||| ||||    
T  17699031 ttctcaaaatggtcttataattagggacggaggtagta 17699068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 57
Target Start/End: Complemental strand, 21756523 - 21756486
Alignment:
Q  20 ttctcaaaatggtcttataattagagacggagggagta 57  Q
    ||||||||| |||||||||||||| |||||||||||||    
T  21756523 ttctcaaaagggtcttataattagggacggagggagta 21756486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 57
Target Start/End: Original strand, 22103929 - 22103966
Alignment:
Q  20 ttctcaaaatggtcttataattagagacggagggagta 57  Q
    ||||||||| |||||||||||||| |||||||||||||    
T  22103929 ttctcaaaagggtcttataattagggacggagggagta 22103966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 106 - 147
Target Start/End: Original strand, 23605998 - 23606039
Alignment:
Q  106 aaatggatttttatgggtagtaggcaaacaaaaataacttca 147  Q
    ||||||||||||||||  |||||||||||| |||||||||||    
T  23605998 aaatggatttttatggagagtaggcaaacacaaataacttca 23606039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 57
Target Start/End: Original strand, 23700785 - 23700822
Alignment:
Q  20 ttctcaaaatggtcttataattagagacggagggagta 57  Q
    ||||||||| |||||||||||||| |||||||||||||    
T  23700785 ttctcaaaaaggtcttataattagggacggagggagta 23700822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 57
Target Start/End: Original strand, 23719240 - 23719277
Alignment:
Q  20 ttctcaaaatggtcttataattagagacggagggagta 57  Q
    ||||||||| |||||||||||||| |||||||||||||    
T  23719240 ttctcaaaaaggtcttataattagggacggagggagta 23719277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 57
Target Start/End: Original strand, 23737696 - 23737733
Alignment:
Q  20 ttctcaaaatggtcttataattagagacggagggagta 57  Q
    ||||||||| |||||||||||||| |||||||||||||    
T  23737696 ttctcaaaaaggtcttataattagggacggagggagta 23737733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 57
Target Start/End: Original strand, 25149122 - 25149159
Alignment:
Q  20 ttctcaaaatggtcttataattagagacggagggagta 57  Q
    ||||||||| |||||||||||||| |||||||||||||    
T  25149122 ttctcaaaagggtcttataattagggacggagggagta 25149159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 57
Target Start/End: Original strand, 26593765 - 26593802
Alignment:
Q  20 ttctcaaaatggtcttataattagagacggagggagta 57  Q
    ||||||||| |||||||||||||| |||||||||||||    
T  26593765 ttctcaaaagggtcttataattagggacggagggagta 26593802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 57
Target Start/End: Original strand, 35868083 - 35868120
Alignment:
Q  20 ttctcaaaatggtcttataattagagacggagggagta 57  Q
    ||||||||| |||||||||||||| |||||||||||||    
T  35868083 ttctcaaaagggtcttataattagggacggagggagta 35868120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 57
Target Start/End: Complemental strand, 37728750 - 37728713
Alignment:
Q  20 ttctcaaaatggtcttataattagagacggagggagta 57  Q
    ||||||||| |||||||||||||| |||||||||||||    
T  37728750 ttctcaaaagggtcttataattagggacggagggagta 37728713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 57
Target Start/End: Complemental strand, 43868140 - 43868103
Alignment:
Q  20 ttctcaaaatggtcttataattagagacggagggagta 57  Q
    ||||||||| |||||||||||||| |||||||||||||    
T  43868140 ttctcaaaagggtcttataattagggacggagggagta 43868103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 57
Target Start/End: Complemental strand, 44543819 - 44543782
Alignment:
Q  20 ttctcaaaatggtcttataattagagacggagggagta 57  Q
    ||||||||| |||||||||||||| |||||||||||||    
T  44543819 ttctcaaaagggtcttataattagggacggagggagta 44543782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 57
Target Start/End: Complemental strand, 45252810 - 45252773
Alignment:
Q  20 ttctcaaaatggtcttataattagagacggagggagta 57  Q
    ||||||||| |||||||||||||| |||||||||||||    
T  45252810 ttctcaaaagggtcttataattagggacggagggagta 45252773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 57
Target Start/End: Original strand, 46049986 - 46050023
Alignment:
Q  20 ttctcaaaatggtcttataattagagacggagggagta 57  Q
    ||||||||| |||||||||||||| |||||||||||||    
T  46049986 ttctcaaaagggtcttataattagggacggagggagta 46050023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 57
Target Start/End: Original strand, 51284062 - 51284099
Alignment:
Q  20 ttctcaaaatggtcttataattagagacggagggagta 57  Q
    ||||||||| |||||||||||||| |||||||||||||    
T  51284062 ttctcaaaagggtcttataattagggacggagggagta 51284099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 21 - 57
Target Start/End: Complemental strand, 4024088 - 4024052
Alignment:
Q  21 tctcaaaatggtcttataattagagacggagggagta 57  Q
    |||||||| |||||||||||||| |||||||||||||    
T  4024088 tctcaaaagggtcttataattagggacggagggagta 4024052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 106 - 138
Target Start/End: Original strand, 32959245 - 32959277
Alignment:
Q  106 aaatggatttttatgggtagtaggcaaacaaaa 138  Q
    ||||||||||||| |||||||||||||||||||    
T  32959245 aaatggatttttaagggtagtaggcaaacaaaa 32959277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 20 - 52
Target Start/End: Complemental strand, 33976540 - 33976508
Alignment:
Q  20 ttctcaaaatggtcttataattagagacggagg 52  Q
    |||||||||||||||||||||||| ||||||||    
T  33976540 ttctcaaaatggtcttataattagggacggagg 33976508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000006; HSPs: 27)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 20 - 57
Target Start/End: Complemental strand, 14171579 - 14171542
Alignment:
Q  20 ttctcaaaatggtcttataattagagacggagggagta 57  Q
    ||||||||| ||||||||||||||||||||||||||||    
T  14171579 ttctcaaaagggtcttataattagagacggagggagta 14171542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 106 - 147
Target Start/End: Complemental strand, 33299639 - 33299598
Alignment:
Q  106 aaatggatttttatgggtagtaggcaaacaaaaataacttca 147  Q
    |||||||||||||||| ||||||||||||| |||||||||||    
T  33299639 aaatggatttttatggatagtaggcaaacacaaataacttca 33299598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 110 - 149
Target Start/End: Complemental strand, 7412146 - 7412107
Alignment:
Q  110 ggatttttatgggtagtaggcaaacaaaaataacttcaaa 149  Q
    |||||||||||| ||||||| |||||||||||||||||||    
T  7412146 ggatttttatggatagtaggtaaacaaaaataacttcaaa 7412107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 106 - 145
Target Start/End: Complemental strand, 35726485 - 35726446
Alignment:
Q  106 aaatggatttttatgggtagtaggcaaacaaaaataactt 145  Q
    |||||||||||||||||||||||| ||| |||||||||||    
T  35726485 aaatggatttttatgggtagtaggtaaataaaaataactt 35726446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 57
Target Start/End: Original strand, 943637 - 943674
Alignment:
Q  20 ttctcaaaatggtcttataattagagacggagggagta 57  Q
    ||||||||| |||||||||||||| |||||||||||||    
T  943637 ttctcaaaagggtcttataattagggacggagggagta 943674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 57
Target Start/End: Original strand, 1039381 - 1039418
Alignment:
Q  20 ttctcaaaatggtcttataattagagacggagggagta 57  Q
    ||||||||| |||||||||||||| |||||||||||||    
T  1039381 ttctcaaaagggtcttataattagggacggagggagta 1039418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 57
Target Start/End: Original strand, 1046287 - 1046324
Alignment:
Q  20 ttctcaaaatggtcttataattagagacggagggagta 57  Q
    ||||||||| |||||||||||||| |||||||||||||    
T  1046287 ttctcaaaagggtcttataattagggacggagggagta 1046324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 57
Target Start/End: Original strand, 4102714 - 4102751
Alignment:
Q  20 ttctcaaaatggtcttataattagagacggagggagta 57  Q
    ||||||||| |||||||||||||| |||||||||||||    
T  4102714 ttctcaaaagggtcttataattagggacggagggagta 4102751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 57
Target Start/End: Complemental strand, 11741434 - 11741397
Alignment:
Q  20 ttctcaaaatggtcttataattagagacggagggagta 57  Q
    ||||||||| |||||||||||||| |||||||||||||    
T  11741434 ttctcaaaagggtcttataattagggacggagggagta 11741397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 57
Target Start/End: Original strand, 15811232 - 15811269
Alignment:
Q  20 ttctcaaaatggtcttataattagagacggagggagta 57  Q
    ||||||||| |||||||||||||| |||||||||||||    
T  15811232 ttctcaaaagggtcttataattagggacggagggagta 15811269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 106 - 147
Target Start/End: Original strand, 18341058 - 18341099
Alignment:
Q  106 aaatggatttttatgggtagtaggcaaacaaaaataacttca 147  Q
    |||| |||||||||||||||  ||||||||||||||||||||    
T  18341058 aaattgatttttatgggtagccggcaaacaaaaataacttca 18341099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 57
Target Start/End: Complemental strand, 23542016 - 23541979
Alignment:
Q  20 ttctcaaaatggtcttataattagagacggagggagta 57  Q
    ||||||||| |||||||||||||| |||||||||||||    
T  23542016 ttctcaaaagggtcttataattagggacggagggagta 23541979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 57
Target Start/End: Complemental strand, 30290302 - 30290265
Alignment:
Q  20 ttctcaaaatggtcttataattagagacggagggagta 57  Q
    ||||||||| |||||||||||||| |||||||||||||    
T  30290302 ttctcaaaagggtcttataattagggacggagggagta 30290265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 57
Target Start/End: Complemental strand, 36694891 - 36694854
Alignment:
Q  20 ttctcaaaatggtcttataattagagacggagggagta 57  Q
    ||||||||| |||||||||||||| |||||||||||||    
T  36694891 ttctcaaaagggtcttataattagggacggagggagta 36694854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 57
Target Start/End: Complemental strand, 36710992 - 36710955
Alignment:
Q  20 ttctcaaaatggtcttataattagagacggagggagta 57  Q
    ||||||||| |||||||||||||| |||||||||||||    
T  36710992 ttctcaaaagggtcttataattagggacggagggagta 36710955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 57
Target Start/End: Original strand, 37951949 - 37951986
Alignment:
Q  20 ttctcaaaatggtcttataattagagacggagggagta 57  Q
    ||||||||| |||||||||||||| |||||||||||||    
T  37951949 ttctcaaaagggtcttataattagggacggagggagta 37951986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 57
Target Start/End: Original strand, 39363194 - 39363231
Alignment:
Q  20 ttctcaaaatggtcttataattagagacggagggagta 57  Q
    ||||||||| |||||||||||||| |||||||||||||    
T  39363194 ttctcaaaagggtcttataattagggacggagggagta 39363231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 57
Target Start/End: Complemental strand, 39497470 - 39497433
Alignment:
Q  20 ttctcaaaatggtcttataattagagacggagggagta 57  Q
    ||||||||| |||||||||||||| |||||||||||||    
T  39497470 ttctcaaaagggtcttataattagggacggagggagta 39497433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 57
Target Start/End: Complemental strand, 44649666 - 44649629
Alignment:
Q  20 ttctcaaaatggtcttataattagagacggagggagta 57  Q
    ||||||||| |||||||||||||| |||||||||||||    
T  44649666 ttctcaaaagggtcttataattagggacggagggagta 44649629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 57
Target Start/End: Complemental strand, 45039449 - 45039412
Alignment:
Q  20 ttctcaaaatggtcttataattagagacggagggagta 57  Q
    ||||||||| |||||||||||||| |||||||||||||    
T  45039449 ttctcaaaagggtcttataattagggacggagggagta 45039412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 57
Target Start/End: Original strand, 46075867 - 46075904
Alignment:
Q  20 ttctcaaaatggtcttataattagagacggagggagta 57  Q
    ||||||||| |||||||||||||| |||||||||||||    
T  46075867 ttctcaaaagggtcttataattagggacggagggagta 46075904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 106 - 147
Target Start/End: Complemental strand, 47684868 - 47684827
Alignment:
Q  106 aaatggatttttatgggtagtaggcaaacaaaaataacttca 147  Q
    ||||||||||||||||| | ||| ||||||||||||||||||    
T  47684868 aaatggatttttatgggcaatagtcaaacaaaaataacttca 47684827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 57
Target Start/End: Complemental strand, 49907058 - 49907021
Alignment:
Q  20 ttctcaaaatggtcttataattagagacggagggagta 57  Q
    ||||||||| |||||||||||||| |||||||||||||    
T  49907058 ttctcaaaagggtcttataattagggacggagggagta 49907021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 57
Target Start/End: Original strand, 50008483 - 50008520
Alignment:
Q  20 ttctcaaaatggtcttataattagagacggagggagta 57  Q
    ||||||||||| |||||||||||| |||||||||||||    
T  50008483 ttctcaaaatgatcttataattagggacggagggagta 50008520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 57
Target Start/End: Complemental strand, 50937816 - 50937779
Alignment:
Q  20 ttctcaaaatggtcttataattagagacggagggagta 57  Q
    |||||||||||||||||||||||| |||||||| ||||    
T  50937816 ttctcaaaatggtcttataattagggacggaggtagta 50937779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 57
Target Start/End: Original strand, 52431174 - 52431211
Alignment:
Q  20 ttctcaaaatggtcttataattagagacggagggagta 57  Q
    ||||||||| |||||||||||||| |||||||||||||    
T  52431174 ttctcaaaagggtcttataattagggacggagggagta 52431211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 20 - 56
Target Start/End: Original strand, 30289862 - 30289898
Alignment:
Q  20 ttctcaaaatggtcttataattagagacggagggagt 56  Q
    ||||||||| |||||||||||||| ||||||||||||    
T  30289862 ttctcaaaagggtcttataattagggacggagggagt 30289898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 21)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 106 - 145
Target Start/End: Complemental strand, 18209595 - 18209556
Alignment:
Q  106 aaatggatttttatgggtagtaggcaaacaaaaataactt 145  Q
    ||||| |||||||| |||||||||||||||||||||||||    
T  18209595 aaatgaatttttataggtagtaggcaaacaaaaataactt 18209556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 106 - 141
Target Start/End: Original strand, 27577939 - 27577974
Alignment:
Q  106 aaatggatttttatgggtagtaggcaaacaaaaata 141  Q
    ||||||||||||||||||||||||||||| ||||||    
T  27577939 aaatggatttttatgggtagtaggcaaacgaaaata 27577974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 110 - 148
Target Start/End: Complemental strand, 11476190 - 11476152
Alignment:
Q  110 ggatttttatgggtagtaggcaaacaaaaataacttcaa 148  Q
    |||||||||||| || |||||||||||||||||||||||    
T  11476190 ggatttttatggataataggcaaacaaaaataacttcaa 11476152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 107 - 145
Target Start/End: Original strand, 31510328 - 31510366
Alignment:
Q  107 aatggatttttatgggtagtaggcaaacaaaaataactt 145  Q
    |||||||||||||| |||||||||||| |||||||||||    
T  31510328 aatggatttttatgtgtagtaggcaaagaaaaataactt 31510366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 112 - 146
Target Start/End: Complemental strand, 33259866 - 33259832
Alignment:
Q  112 atttttatgggtagtaggcaaacaaaaataacttc 146  Q
    |||||||| ||||||||||||||||||||||||||    
T  33259866 atttttataggtagtaggcaaacaaaaataacttc 33259832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 57
Target Start/End: Complemental strand, 2438262 - 2438225
Alignment:
Q  20 ttctcaaaatggtcttataattagagacggagggagta 57  Q
    ||||||||| |||||||||||||| |||||||||||||    
T  2438262 ttctcaaaagggtcttataattagggacggagggagta 2438225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 57
Target Start/End: Complemental strand, 5664675 - 5664638
Alignment:
Q  20 ttctcaaaatggtcttataattagagacggagggagta 57  Q
    ||||||||| |||||||||||||| |||||||||||||    
T  5664675 ttctcaaaaaggtcttataattagggacggagggagta 5664638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 57
Target Start/End: Complemental strand, 7491881 - 7491844
Alignment:
Q  20 ttctcaaaatggtcttataattagagacggagggagta 57  Q
    ||||||||| |||||||||||||| |||||||||||||    
T  7491881 ttctcaaaagggtcttataattagggacggagggagta 7491844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 57
Target Start/End: Original strand, 8716892 - 8716929
Alignment:
Q  20 ttctcaaaatggtcttataattagagacggagggagta 57  Q
    ||||||||| |||||||||||||| |||||||||||||    
T  8716892 ttctcaaaagggtcttataattagggacggagggagta 8716929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 57
Target Start/End: Complemental strand, 11201720 - 11201683
Alignment:
Q  20 ttctcaaaatggtcttataattagagacggagggagta 57  Q
    ||||||||| |||||||||||||| |||||||||||||    
T  11201720 ttctcaaaagggtcttataattagggacggagggagta 11201683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 57
Target Start/End: Original strand, 17408294 - 17408331
Alignment:
Q  20 ttctcaaaatggtcttataattagagacggagggagta 57  Q
    ||||||||| |||||||||||||| |||||||||||||    
T  17408294 ttctcaaaagggtcttataattagggacggagggagta 17408331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 57
Target Start/End: Complemental strand, 20252247 - 20252210
Alignment:
Q  20 ttctcaaaatggtcttataattagagacggagggagta 57  Q
    ||||||||| |||||||||||||| |||||||||||||    
T  20252247 ttctcaaaagggtcttataattagggacggagggagta 20252210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 106 - 147
Target Start/End: Complemental strand, 21501453 - 21501412
Alignment:
Q  106 aaatggatttttatgggtagtaggcaaacaaaaataacttca 147  Q
    |||||||||||||||| ||||||||||||| |||||| ||||    
T  21501453 aaatggatttttatggatagtaggcaaacacaaataatttca 21501412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 57
Target Start/End: Complemental strand, 25624770 - 25624733
Alignment:
Q  20 ttctcaaaatggtcttataattagagacggagggagta 57  Q
    ||||||||| |||||||||||||| |||||||||||||    
T  25624770 ttctcaaaaaggtcttataattagggacggagggagta 25624733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 57
Target Start/End: Complemental strand, 27560243 - 27560206
Alignment:
Q  20 ttctcaaaatggtcttataattagagacggagggagta 57  Q
    ||||||||| |||||||||||||| |||||||||||||    
T  27560243 ttctcaaaagggtcttataattagggacggagggagta 27560206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 57
Target Start/End: Original strand, 34062665 - 34062702
Alignment:
Q  20 ttctcaaaatggtcttataattagagacggagggagta 57  Q
    ||||||||| |||||||||||||| |||||||||||||    
T  34062665 ttctcaaaagggtcttataattagggacggagggagta 34062702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 57
Target Start/End: Original strand, 34883848 - 34883885
Alignment:
Q  20 ttctcaaaatggtcttataattagagacggagggagta 57  Q
    ||||||||| |||||||||||||| |||||||||||||    
T  34883848 ttctcaaaagggtcttataattagggacggagggagta 34883885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 57
Target Start/End: Original strand, 36131028 - 36131065
Alignment:
Q  20 ttctcaaaatggtcttataattagagacggagggagta 57  Q
    ||||||||| |||||||||||||| |||||||||||||    
T  36131028 ttctcaaaagggtcttataattagggacggagggagta 36131065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 57
Target Start/End: Complemental strand, 37229477 - 37229440
Alignment:
Q  20 ttctcaaaatggtcttataattagagacggagggagta 57  Q
    |||||||||||||||||||||||| |||||| ||||||    
T  37229477 ttctcaaaatggtcttataattagggacggaaggagta 37229440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 57
Target Start/End: Complemental strand, 40607739 - 40607702
Alignment:
Q  20 ttctcaaaatggtcttataattagagacggagggagta 57  Q
    ||||||||| |||||||||||||| |||||||||||||    
T  40607739 ttctcaaaagggtcttataattagggacggagggagta 40607702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 57
Target Start/End: Complemental strand, 41450553 - 41450516
Alignment:
Q  20 ttctcaaaatggtcttataattagagacggagggagta 57  Q
    ||||||||| |||||||||||||| |||||||||||||    
T  41450553 ttctcaaaagggtcttataattagggacggagggagta 41450516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 23 - 57
Target Start/End: Complemental strand, 355076 - 355042
Alignment:
Q  23 tcaaaatggtcttataattagagacggagggagta 57  Q
    ||||||||||| |||||||||||||||||||||||    
T  355076 tcaaaatggtcctataattagagacggagggagta 355042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0604 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0604
Description:

Target: scaffold0604; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 57
Target Start/End: Original strand, 3782 - 3819
Alignment:
Q  20 ttctcaaaatggtcttataattagagacggagggagta 57  Q
    ||||||||| |||||||||||||| |||||||||||||    
T  3782 ttctcaaaagggtcttataattagggacggagggagta 3819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0122 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0122
Description:

Target: scaffold0122; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 57
Target Start/End: Complemental strand, 12102 - 12065
Alignment:
Q  20 ttctcaaaatggtcttataattagagacggagggagta 57  Q
    ||||||||| |||||||||||||| |||||||||||||    
T  12102 ttctcaaaagggtcttataattagggacggagggagta 12065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 57
Target Start/End: Original strand, 51682 - 51719
Alignment:
Q  20 ttctcaaaatggtcttataattagagacggagggagta 57  Q
    ||||||||| |||||||||||||| |||||||||||||    
T  51682 ttctcaaaagggtcttataattagggacggagggagta 51719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 57
Target Start/End: Original strand, 65637 - 65674
Alignment:
Q  20 ttctcaaaatggtcttataattagagacggagggagta 57  Q
    ||||||||| |||||||||||||| |||||||||||||    
T  65637 ttctcaaaaaggtcttataattagggacggagggagta 65674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 57
Target Start/End: Complemental strand, 47677 - 47640
Alignment:
Q  20 ttctcaaaatggtcttataattagagacggagggagta 57  Q
    ||||||||| |||||||||||||| |||||||||||||    
T  47677 ttctcaaaagggtcttataattagggacggagggagta 47640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 57
Target Start/End: Original strand, 259122 - 259159
Alignment:
Q  20 ttctcaaaatggtcttataattagagacggagggagta 57  Q
    ||||||||| |||||||||||||| |||||||||||||    
T  259122 ttctcaaaagggtcttataattagggacggagggagta 259159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 110 - 147
Target Start/End: Original strand, 337389 - 337426
Alignment:
Q  110 ggatttttatgggtagtaggcaaacaaaaataacttca 147  Q
    ||||||||||| |||| |||||||||||||||||||||    
T  337389 ggatttttatgcgtagcaggcaaacaaaaataacttca 337426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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