View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11828_high_11 (Length: 442)
Name: NF11828_high_11
Description: NF11828
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11828_high_11 |
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Alignment Details
Target: chr2 (Bit Score: 392; Significance: 0; HSPs: 9)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 1 - 433
Target Start/End: Complemental strand, 5466819 - 5466387
Alignment:
| Q |
1 |
aagtccaagtgactcaaatgttttaagtcaagtaatgaaggatttatcttacctcccaagggagactgtaaaaatatatctgttgtgcagatatgaaggt |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5466819 |
aagtccaagtgactcaaatgttttaagtcaagtaatgaaggatttatcttacctcccaagggagactgtaaaaatatatctgttgtgcagatatgaaggg |
5466720 |
T |
|
| Q |
101 |
gctggagatcaagcttaagaatgttacctgttttattgtcacattgtataccaatccagtcacagcaatccttcccaacccaagaggaaaggcaattgga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5466719 |
gctggagatcaagcttaagaatgttacctgttttattgtcacattgtataccaatccagtcacagcaatccttcccaacccaagaggaaaggcaattgga |
5466620 |
T |
|
| Q |
201 |
aggatcgttcagatcnnnnnnnatgttaaggagtgccaccctctcttctttaatgcaaagagtgctaacatcaaggctcataactacacactgagttgat |
300 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5466619 |
aggatcgttcagatctttttttatgttaaggagtgccaccctctcttctttaatgcaaagagtgctaacatcaaggctcataactacacactgagttgat |
5466520 |
T |
|
| Q |
301 |
gcaaaaagaaagaggagagcaataacataatatccaaaggccatttttgtgcttgccatcatcacactagaggatatagaacaaaatggcaagtaatttt |
400 |
Q |
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|
||||||||||||||||||||||||||||||||||||||| | ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5466519 |
gcaaaaagaaagaggagagcaataacataatatccaaagacgattcttgtgcttgccatcatcacactagaggatatagaacaaaatggcaagtaatttt |
5466420 |
T |
|
| Q |
401 |
ttggtttgtataagttatatatctttgtctctg |
433 |
Q |
| |
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|||||||||||||||||||||||||||| |||| |
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| T |
5466419 |
ttggtttgtataagttatatatctttgtttctg |
5466387 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 106 - 377
Target Start/End: Complemental strand, 5481467 - 5481196
Alignment:
| Q |
106 |
agatcaagcttaagaatgttacctgttttattgtcacattgtataccaatccagtcacagcaatccttcccaacccaagaggaaaggcaattggaaggat |
205 |
Q |
| |
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||||||||||||||||||| ||| |||| || |||||||| ||||||||||||| ||| ||||| ||||||||||| || |||||||||||| |||||| |
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| T |
5481467 |
agatcaagcttaagaatgtaaccagtttgatagtcacattctataccaatccagcgacaacaatctttcccaacccatgaagaaaggcaattgtaaggat |
5481368 |
T |
|
| Q |
206 |
cgttcagatcnnnnnnnatgttaaggagtgccaccctctcttctttaatgcaaagagtgctaacatcaaggctcataactacacactgagttgatgcaaa |
305 |
Q |
| |
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| || ||||| | |||||||||||||| |||||||| |||||||||||||||||||||| |||||| ||||| |||| |||||||||||||| |
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| T |
5481367 |
cattgagatcttttttgacgttaaggagtgccattctctcttccttaatgcaaagagtgctaacattaaggcttttaacttcacattgagttgatgcaaa |
5481268 |
T |
|
| Q |
306 |
aagaaagaggagagcaataacataatatccaaaggccatttttgtgcttgccatcatcacactagaggatat |
377 |
Q |
| |
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||| |||| ||||| ||||||| || | || | ||||||||||||||||||||| ||| ||||||||| |
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| T |
5481267 |
aaggaagaagagaggaataacaatatgtacactgatgatttttgtgcttgccatcatcccaccagaggatat |
5481196 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 136 - 377
Target Start/End: Complemental strand, 5476350 - 5476109
Alignment:
| Q |
136 |
ttgtcacattgtataccaatccagtcacagcaatccttcccaacccaagaggaaaggcaattggaaggatcgttcagatcnnnnnnnatgttaaggagtg |
235 |
Q |
| |
|
|||||||||| ||||| |||| | ||||||||| | ||| ||||| || |||||||||||||||||||| || ||||| ||||||||||||| |
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| T |
5476350 |
ttgtcacattcaatacccttccaattacagcaatcttccccgacccatgacgaaaggcaattggaaggatcattgagatcttttttgatgttaaggagtg |
5476251 |
T |
|
| Q |
236 |
ccaccctctcttctttaatgcaaagagtgctaacatcaaggctcataactacacactgagttgatgcaaaaagaaagaggagagcaataacataatatcc |
335 |
Q |
| |
|
|||| |||||||| |||||||||||||||||||||| ||||||| ||||| |||| ||||||||||||||||| |||| ||||| ||||||| || ||| |
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| T |
5476250 |
ccactctctcttccttaatgcaaagagtgctaacattaaggctcttaacttcacattgagttgatgcaaaaaggaagaagagagaaataacaatatgtcc |
5476151 |
T |
|
| Q |
336 |
aaaggccatttttgtgcttgccatcatcacactagaggatat |
377 |
Q |
| |
|
|| | ||||||||||||||||||||| ||| ||||||||| |
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| T |
5476150 |
aatgatgatttttgtgcttgccatcatcccaccagaggatat |
5476109 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 136 - 338
Target Start/End: Complemental strand, 5489471 - 5489269
Alignment:
| Q |
136 |
ttgtcacattgtataccaatccagtcacagcaatccttcccaacccaagaggaaaggcaattggaaggatcgttcagatcnnnnnnnatgttaaggagtg |
235 |
Q |
| |
|
|||||||||| |||||| |||| | ||| ||||| | ||||||||| || ||||||||||| |||||||| || ||||| || |||||||||| |
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| T |
5489471 |
ttgtcacattctatacccttccaattacaacaatcttccccaacccatgaagaaaggcaatttgaaggatccttgagatcttttttgattttaaggagtg |
5489372 |
T |
|
| Q |
236 |
ccaccctctcttctttaatgcaaagagtgctaacatcaaggctcataactacacactgagttgatgcaaaaagaaagaggagagcaataacataatatcc |
335 |
Q |
| |
|
|||| |||||||| |||||||||||||| ||||||| |||||| | |||| |||| ||||||||||||||||||| ||| ||||| ||| ||||| | |
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|
| T |
5489371 |
ccactctctcttccttaatgcaaagagtactaacattaaggctagtcactaagtactgggttgatgcaaaaagaaagaagagggcaatgacaaaatatgc |
5489272 |
T |
|
| Q |
336 |
aaa |
338 |
Q |
| |
|
||| |
|
|
| T |
5489271 |
aaa |
5489269 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 136 - 278
Target Start/End: Complemental strand, 5484286 - 5484144
Alignment:
| Q |
136 |
ttgtcacattgtataccaatccagtcacagcaatccttcccaacccaagaggaaaggcaattggaaggatcgttcagatcnnnnnnnatgttaaggagtg |
235 |
Q |
| |
|
|||||||||| ||||| |||| | ||||||||| | |||||| || || |||||||||||||| ||||| || ||||| ||||||||||||| |
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| T |
5484286 |
ttgtcacattcaatacccttccaattacagcaatcttccccaactcatgaagaaaggcaattggatggatctttgagatctattttgatgttaaggagtg |
5484187 |
T |
|
| Q |
236 |
ccaccctctcttctttaatgcaaagagtgctaacatcaaggct |
278 |
Q |
| |
|
|||| |||||||| |||||||||||||||||||||| |||||| |
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|
| T |
5484186 |
ccactctctcttccttaatgcaaagagtgctaacattaaggct |
5484144 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 136 - 313
Target Start/End: Complemental strand, 5495253 - 5495076
Alignment:
| Q |
136 |
ttgtcacattgtataccaatccagtcacagcaatccttcccaacccaagaggaaaggcaattggaaggatcgttcagatcnnnnnnnatgttaaggagtg |
235 |
Q |
| |
|
|||| |||||||||||| |||| | ||||||||| | ||| ||||| || ||||| |||||||| ||||| || ||||| || |||||||||| |
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|
| T |
5495253 |
ttgttacattgtatacccttccaattacagcaatcttccccgacccatgaagaaagacaattggatggatctttgagatcttttttgattttaaggagtg |
5495154 |
T |
|
| Q |
236 |
ccaccctctcttctttaatgcaaagagtgctaacatcaaggctcataactacacactgagttgatgcaaaaagaaaga |
313 |
Q |
| |
|
|||| |||||||| |||||||||||||||||||||| | ||| | |||||| | || ||||||||||||||||||| |
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|
| T |
5495153 |
ccactctctcttccttaatgcaaagagtgctaacattattgctactcactacatattgggttgatgcaaaaagaaaga |
5495076 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 3 - 53
Target Start/End: Complemental strand, 5481561 - 5481511
Alignment:
| Q |
3 |
gtccaagtgactcaaatgttttaagtcaagtaatgaaggatttatcttacc |
53 |
Q |
| |
|
|||||||||||||||||||||||||| || ||||||||||||||||||||| |
|
|
| T |
5481561 |
gtccaagtgactcaaatgttttaagttaactaatgaaggatttatcttacc |
5481511 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 3 - 78
Target Start/End: Complemental strand, 5495392 - 5495317
Alignment:
| Q |
3 |
gtccaagtgactcaaatgttttaagtcaagtaatgaaggatttatcttacctcccaagggagactgtaaaaatata |
78 |
Q |
| |
|
||||||||||||||| ||||| |||||| |||||||||||||||||||| || ||||||||| || |||||||| |
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|
| T |
5495392 |
gtccaagtgactcaagtgtttcaagtcagccaatgaaggatttatcttaccaccaaagggagacagtgaaaatata |
5495317 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 3 - 61
Target Start/End: Complemental strand, 5489610 - 5489552
Alignment:
| Q |
3 |
gtccaagtgactcaaatgttttaagtcaagtaatgaaggatttatcttacctcccaagg |
61 |
Q |
| |
|
||||||||||||||| ||||| |||||| |||||||||||||||||||| || |||| |
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|
| T |
5489610 |
gtccaagtgactcaagtgtttcaagtcagccaatgaaggatttatcttaccaccaaagg |
5489552 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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