View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11828_high_18 (Length: 357)
Name: NF11828_high_18
Description: NF11828
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11828_high_18 |
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Alignment Details
Target: chr7 (Bit Score: 288; Significance: 1e-161; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 18 - 341
Target Start/End: Complemental strand, 48016002 - 48015679
Alignment:
| Q |
18 |
gtgtcatctttttaagatatcgtcttttatttttggttttgtaatataaatttctacgtatacttgtatttaagtcattgtttgtgcaaatggagtttct |
117 |
Q |
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| T |
48016002 |
gtgtcatctttttaagatatcgtcttttatttttggttttgtaatataattttctacgtatacttgtatttaagtcattgtttgtgcaaatggagtttct |
48015903 |
T |
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| Q |
118 |
tttcaaggtaccatcttgaaaagagtttcatatgcaaggctccatttaaacaataataagaaccgtgctggatgtgtgtaagcaaggatcactcactact |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||| ||||| |
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| T |
48015902 |
tttcaaggtaccatcttgaaaagagtttcatatgcaaggctccatttacacaataataagaaccgtgctggatgtgtgtaagcaaggattactcgctact |
48015803 |
T |
|
| Q |
218 |
tgcaaatgaaacagtgacttaaattgtaatgtaattatattgctggttttgtaatatgcgtgtaagcttgctctattgtacctcaaataatacatatact |
317 |
Q |
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||||||||||||||||| ||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
48015802 |
tgcaaatgaaacagtgatttaaattgtaatgaaattctattgctggttttgtaatatgcgtgtaagcttgctctattgtacctccaataatacatatact |
48015703 |
T |
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| Q |
318 |
tgttcttaaatggactacaatttc |
341 |
Q |
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||||||||||||||||| |||||| |
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| T |
48015702 |
tgttcttaaatggactaaaatttc |
48015679 |
T |
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