View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11828_high_19 (Length: 345)
Name: NF11828_high_19
Description: NF11828
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11828_high_19 |
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Alignment Details
Target: chr2 (Bit Score: 316; Significance: 1e-178; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 17 - 336
Target Start/End: Original strand, 131966 - 132285
Alignment:
| Q |
17 |
agaatttagcttggagtaatcgtgccatacatgtgtctgctataaatcaaacgaaatggtataataagctcatatgttaatttgttttccctctgcggtc |
116 |
Q |
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| T |
131966 |
agaatttagcttggagtaatcgtgccatacatgtgtctgctataaatcaaacgaaatggtataataagctcatatgttaatttgttttccctctgcggtc |
132065 |
T |
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| Q |
117 |
atctactcctatatctgtaaatattaaacaaataaattctctctatcatgacataggtggtttgcaaaacgatttttgcatccagacatagttgctgact |
216 |
Q |
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| T |
132066 |
atctactcctatatctgtaaatattaaacaaataaattctctctatcatgacataggtggtttgcaaaacgatttttgcatccagacatagttgctgact |
132165 |
T |
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| Q |
217 |
acaattatatatttctctgggatgaggaccttcttgtcgataattttgacccgaaaaggtaaggcacttgtgcatgtcttgttaaatttagaattttcat |
316 |
Q |
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| T |
132166 |
acaattatatatttctctgggatgaggaccttcttgtcgataattttgacccgaaaaggtaaggcacttgtgcatgtcttgttaaatttagaattttcat |
132265 |
T |
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| Q |
317 |
ttttgcagatatacctttgc |
336 |
Q |
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| T |
132266 |
ttttgtagatatacctttgc |
132285 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 170 - 247
Target Start/End: Complemental strand, 35047018 - 35046941
Alignment:
| Q |
170 |
taggtggtttgcaaaacgatttttgcatccagacatagttgctgactacaattatatatttctctgggatgaggacct |
247 |
Q |
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| T |
35047018 |
taggtggtttgcgaagcgtttcttacatcccgacatagttgctgagtatgattatattttcctttgggatgaggacct |
35046941 |
T |
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