View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11828_high_24 (Length: 295)
Name: NF11828_high_24
Description: NF11828
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11828_high_24 |
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Alignment Details
Target: chr2 (Bit Score: 243; Significance: 1e-135; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 22 - 284
Target Start/End: Complemental strand, 5467058 - 5466796
Alignment:
| Q |
22 |
acaaggtgtagagccagcttatgtctctgacccaaagtcccgtagtgagcgagcctatgtctgaaagtgtccagcttatacttgggccagagacatcatg |
121 |
Q |
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| T |
5467058 |
acaaggtatagagccagcttatgtctctgacccaaagtcccgtagtgagcaagcctatgtctgaaagtgtccagcttatacttgggccagagacatcaag |
5466959 |
T |
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| Q |
122 |
atgatgcaaatttgacaaatttccgagatgaggagggaccattccagaaaaatttgcatgggataaatcaaggtaattgagcgtattgagagaaccaata |
221 |
Q |
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| T |
5466958 |
atgatgcaaatttgacaaatttccgagatgaggagggaccattccagaaaaatttgcatgggataaatcaaggtaattgagcgtattgagagaaccaata |
5466859 |
T |
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| Q |
222 |
aattctggaatgggaactcctttgaaatcattatagcttaagtccaagtgactcaaatgtttt |
284 |
Q |
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| T |
5466858 |
aattcaggaatgggaactcctttgaaatcattatagctcaagtccaagtgactcaaatgtttt |
5466796 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 110 - 284
Target Start/End: Complemental strand, 5481714 - 5481540
Alignment:
| Q |
110 |
agagacatcatgatgatgcaaatttgacaaatttccgagatgaggagggaccattccagaaaaatttgcatgggataaatcaaggtaattgagcgtattg |
209 |
Q |
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| T |
5481714 |
agagatatcaagataatgcaaatttgacagattgccaagatgaggaaggaccattcctgtaaaatttgcattagataagtcaaggtaattgagcatattg |
5481615 |
T |
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| Q |
210 |
agagaaccaataaattctggaatgggaactcctttgaaatcattatagcttaagtccaagtgactcaaatgtttt |
284 |
Q |
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| T |
5481614 |
agagaaccaataaattctggaatgggaactcctttgaaatcattaaagcttaggtccaagtgactcaaatgtttt |
5481540 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 110 - 283
Target Start/End: Complemental strand, 5495545 - 5495372
Alignment:
| Q |
110 |
agagacatcatgatgatgcaaatttgacaaatttccgagatgaggagggaccattccagaaaaatttgcatgggataaatcaaggtaattgagcgtattg |
209 |
Q |
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| T |
5495545 |
agagatatcaagataatgcaagtttgacaaattgccaagatgaggggggaccattccagaaaaatatgaatctgataagtcaaggtaattgagcatattg |
5495446 |
T |
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| Q |
210 |
agagaaccaataaattctggaatgggaactcctttgaaatcattatagcttaagtccaagtgactcaaatgttt |
283 |
Q |
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| T |
5495445 |
agggaaccaataaattctggaatgggaactccttcgaaatcattatatcttaggtccaagtgactcaagtgttt |
5495372 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 104 - 283
Target Start/End: Complemental strand, 5489769 - 5489590
Alignment:
| Q |
104 |
tgggccagagacatcatgatgatgcaaatttgacaaatttccgagatgaggagggaccattccagaaaaatttgcatgggataaatcaaggtaattgagc |
203 |
Q |
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| T |
5489769 |
tgggctagagatatcaagatagtgtaaatttgataaattgccaagattagtcgggaccattccagtgaaatttgcattggacaagtcaaggtaattgagc |
5489670 |
T |
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| Q |
204 |
gtattgagagaaccaataaattctggaatgggaactcctttgaaatcattatagcttaagtccaagtgactcaaatgttt |
283 |
Q |
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| T |
5489669 |
atattgagataaccaataaattctggaatgggagctccttcaaagtcactatagcttaggtccaagtgactcaagtgttt |
5489590 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 127 - 277
Target Start/End: Complemental strand, 5484561 - 5484411
Alignment:
| Q |
127 |
gcaaatttgacaaatttccgagatgaggagggaccattccagaaaaatttgcatgggataaatcaaggtaattgagcgtattgagagaaccaataaattc |
226 |
Q |
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|||||||||||||||| || |||||| |||||| ||||||| ||||||||||| |||| ||||||||||| | | | ||||||||||||||| ||| |
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| T |
5484561 |
gcaaatttgacaaattgccaagatgattagggacaattccagtaaaatttgcatttgataggtcaaggtaattcaacattttgagagaaccaatatgttc |
5484462 |
T |
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| Q |
227 |
tggaatgggaactcctttgaaatcattatagcttaagtccaagtgactcaa |
277 |
Q |
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| T |
5484461 |
tggaatgggaattccttcgaaatcattgaagcttaagtccaagtgactcaa |
5484411 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 110 - 283
Target Start/End: Complemental strand, 5476638 - 5476465
Alignment:
| Q |
110 |
agagacatcatgatgatgcaaatttgacaaatttccgagatgaggagggaccattccagaaaaatttgcatgggataaatcaaggtaattgagcgtattg |
209 |
Q |
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| T |
5476638 |
agagatatcaagatggtgcaaatttgacaaattaccaagatcagtagggaccattcctgtaaattttgaattagataagtcaagataattcagcatattg |
5476539 |
T |
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| Q |
210 |
agagaaccaataaattctggaatgggaactcctttgaaatcattatagcttaagtccaagtgactcaaatgttt |
283 |
Q |
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||||||||||||||||||||||||| || ||||||||| | ||| || || | ||||||||||||||| ||||| |
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| T |
5476538 |
agagaaccaataaattctggaatggaaattcctttgaagttattgtaactcaggtccaagtgactcaagtgttt |
5476465 |
T |
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