View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11828_high_25 (Length: 294)

Name: NF11828_high_25
Description: NF11828
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11828_high_25
NF11828_high_25
[»] chr4 (5 HSPs)
chr4 (90-277)||(14056304-14056491)
chr4 (1-97)||(14054980-14055076)
chr4 (74-156)||(45683821-45683899)
chr4 (67-103)||(7000040-7000076)
chr4 (67-103)||(42507958-42507994)
[»] chr5 (3 HSPs)
chr5 (1-160)||(29267192-29267351)
chr5 (1-160)||(13200131-13200287)
chr5 (1-103)||(29104657-29104759)
[»] chr1 (2 HSPs)
chr1 (72-150)||(11022677-11022753)
chr1 (1-103)||(37349387-37349487)
[»] chr3 (4 HSPs)
chr3 (67-160)||(34367151-34367242)
chr3 (72-125)||(39888708-39888761)
chr3 (72-153)||(53585318-53585397)
chr3 (74-103)||(12764409-12764438)
[»] chr2 (4 HSPs)
chr2 (67-160)||(42460653-42460743)
chr2 (67-151)||(8380991-8381073)
chr2 (67-100)||(41493554-41493587)
chr2 (67-103)||(33618405-33618441)
[»] chr8 (3 HSPs)
chr8 (72-160)||(403923-404010)
chr8 (67-160)||(44825289-44825383)
chr8 (120-160)||(6048653-6048693)


Alignment Details
Target: chr4 (Bit Score: 164; Significance: 1e-87; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 90 - 277
Target Start/End: Original strand, 14056304 - 14056491
Alignment:
Q  90 taaaatgatttagtgtctcaaaagatgacatttttacgtatgtttgtgaccaaacactattcatttgtgttgtgtgatcaaatactattcatttatttta 189  Q
    ||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||    
T  14056304 taaaatgatttagtgtctctaaagatgacatttttatgtatgtttgtgaccaaacactattcatttgtgttgtgtgaccaaatactaatcatttatttta 14056403  T
Q  190 atcttgaaatcaagatctattgtgattaatttatctcgaagtatgttctttttaagacaaagaggtaacacacgtacaagttaaatgt 277  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  14056404 atcttgaaatgaagatctattgtgattaatttatctcgaagtatgttctttttaagacaaagaggtaacacacttacaagttaaatgt 14056491  T

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Target: chr4; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 14054980 - 14055076
Alignment:
Q  1 attctcttatagtcacaaacacagatgtatagtgtttgggcatacacacgtcacaagannnnnnnnaatagtgaaaaagaaattgataataaaatga 97  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         ||||||||||||||||||||||||||||||    
T  14054980 attctcttatagtcacaaacacagatgtatagtgtttgggcatacacacgtcacaagattttttttgatagtgaaaaagaaattgataataaaatga 14055076  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 74 - 156
Target Start/End: Original strand, 45683821 - 45683899
Alignment:
Q  74 aaaaagaaattgataataaaatgatttagtgtctcaaaagatgacatttttacgtatgtttgtgaccaaacactattcatttg 156  Q
    |||||||||||||| ||||||||||||||| | |||||| |||||| |||    ||||| |||| ||||||||||| ||||||    
T  45683821 aaaaagaaattgattataaaatgatttagtatttcaaaaaatgacacttt----tatgtgtgtgcccaaacactatacatttg 45683899  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 67 - 103
Target Start/End: Complemental strand, 7000076 - 7000040
Alignment:
Q  67 aatagtgaaaaagaaattgataataaaatgatttagt 103  Q
    |||| ||||||||||||| ||||||||||||||||||    
T  7000076 aataatgaaaaagaaattaataataaaatgatttagt 7000040  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 67 - 103
Target Start/End: Complemental strand, 42507994 - 42507958
Alignment:
Q  67 aatagtgaaaaagaaattgataataaaatgatttagt 103  Q
    |||| |||||||||||||||||||||||| |||||||    
T  42507994 aataatgaaaaagaaattgataataaaataatttagt 42507958  T

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Target: chr5 (Bit Score: 48; Significance: 2e-18; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 160
Target Start/End: Complemental strand, 29267351 - 29267192
Alignment:
Q  1 attctcttatagtcacaaacacagatgtatagtgtttgggc--atacacacgtcacaagannnnnnnnaatagtgaaaaagaaattgataataaaatgat 98  Q
    ||||| |||||||||||| |||| |||| ||||||||||||  | |||||| | ||||||        |||| ||||||||||||||||||| |||||||    
T  29267351 attctattatagtcacaagcacaaatgtgtagtgtttgggcgcacacacacattacaagattttcttaaataatgaaaaagaaattgataatgaaatgat 29267252  T
Q  99 ttagtgtctcaaaagatgacatttttacgtatgtttgtgaccaaacactattcatttgtgtt 160  Q
    ||||| | | |||| |||||| |||||  | ||| ||||||||||||||||| |||||||||    
T  29267251 ttagtattttaaaaaatgacactttta--tgtgtatgtgaccaaacactatttatttgtgtt 29267192  T

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Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 160
Target Start/End: Complemental strand, 13200287 - 13200131
Alignment:
Q  1 attctcttatagtcacaaacacagatgtatagtgtttgggcatacacacgtcacaagannnnnnnnaatagtgaaaaagaaattgataataaaatgattt 100  Q
    ||||| ||||| ||||||||||| ||| ||||||||| |||| |||||  ||||||||        |||| | | |||||||||||||||||||||||||    
T  13200287 attcttttataatcacaaacacaaatgcatagtgtttcggcacacaca--tcacaagattttttttaataataagaaagaaattgataataaaatgattt 13200190  T
Q  101 agt-gtctcaaaagatgacatttttacgtatgtttgtgaccaaacactattcatttgtgtt 160  Q
    |||  | | |||| ||||||| ||||  | ||| ||||||||||||| |||||||||||||    
T  13200189 agtattttaaaaaaatgacatattta--tgtgtgtgtgaccaaacacaattcatttgtgtt 13200131  T

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Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 29104657 - 29104759
Alignment:
Q  1 attctcttatagtcacaaacacagatgtatagtgtttgggcatacacacgtcacaagannnnnnnnaatagtgaaaaagaaattgataataaaatgattt 100  Q
    ||||| |||||||||||| |||| ||| |||||||||||||| |||||  | ||||||        |||| ||||||||||||||||||| |||||||||    
T  29104657 attctattatagtcacaagcacaaatgcatagtgtttgggcacacacatattacaagattttcttaaataatgaaaaagaaattgataatgaaatgattt 29104756  T
Q  101 agt 103  Q
    |||    
T  29104757 agt 29104759  T

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Target: chr1 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 72 - 150
Target Start/End: Original strand, 11022677 - 11022753
Alignment:
Q  72 tgaaaaagaaattgataataaaatgatttagtgtctcaaaagatgacatttttacgtatgtttgtgaccaaacactatt 150  Q
    |||||||||||||||||||||||||||||||| | |||||| ||||||||||||   |||| | |||||||||||||||    
T  11022677 tgaaaaagaaattgataataaaatgatttagtatttcaaaaaatgacattttta--gatgtatatgaccaaacactatt 11022753  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 37349487 - 37349387
Alignment:
Q  1 attctcttatagtcacaaacacagatgtatagtgtttgggcatacacacgtcacaagannnnnnnnaatagtgaaaaagaaattgataataaaatgattt 100  Q
    ||||| ||||||||||||||||| ||| ||||||||| | || |||||  | ||||||        |||| |||| ||||||||||||||||||||||||    
T  37349487 attcttttatagtcacaaacacaaatgcatagtgtttagacacacaca--ttacaagattttttttaataatgaagaagaaattgataataaaatgattt 37349390  T
Q  101 agt 103  Q
    |||    
T  37349389 agt 37349387  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 67 - 160
Target Start/End: Complemental strand, 34367242 - 34367151
Alignment:
Q  67 aatagtgaaaaagaaattgataataaaatgatttagtgtctcaaaagatgacatttttacgtatgtttgtgaccaaacactattcatttgtgtt 160  Q
    |||| ||||||||||||||||||| |||||||||||| | |||| | |||| |||||||  | ||| |||||| |||||||||| |||||||||    
T  34367242 aataatgaaaaagaaattgataatgaaatgatttagtatttcaagaaatgatattttta--tgtgtatgtgactaaacactatttatttgtgtt 34367151  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 72 - 125
Target Start/End: Complemental strand, 39888761 - 39888708
Alignment:
Q  72 tgaaaaagaaattgataataaaatgatttagtgtctcaaaagatgacattttta 125  Q
    |||||||||||||||||||||||||||||||| | |||||| || || ||||||    
T  39888761 tgaaaaagaaattgataataaaatgatttagtatttcaaaaaataactttttta 39888708  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 72 - 153
Target Start/End: Original strand, 53585318 - 53585397
Alignment:
Q  72 tgaaaaagaaattgataataaaatgatttagtgtctcaaaagatgacatttttacgtatgtttgtgaccaaacactattcat 153  Q
    ||||||||||||| |||||||||||||||| | | | || | ||||||||||||  | ||| |||||||||||| |||||||    
T  53585318 tgaaaaagaaattaataataaaatgatttaatattttaagaaatgacattttta--tgtgtgtgtgaccaaacattattcat 53585397  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 74 - 103
Target Start/End: Original strand, 12764409 - 12764438
Alignment:
Q  74 aaaaagaaattgataataaaatgatttagt 103  Q
    ||||||||||||||||||||||||||||||    
T  12764409 aaaaagaaattgataataaaatgatttagt 12764438  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 67 - 160
Target Start/End: Complemental strand, 42460743 - 42460653
Alignment:
Q  67 aatagtgaaaaagaaattgataataaaatgatttagtgtctcaaaagatgacatttttacgtatgtttgtgaccaaacactattcatttgtgtt 160  Q
    |||| ||||||| |||||||||||||||||||||||| | |||| | |||||| |||||  |||| |||||| |||| ||||||||||||||||    
T  42460743 aatattgaaaaaaaaattgataataaaatgatttagtatttcaagaaatgacactttta--tatg-ttgtgatcaaatactattcatttgtgtt 42460653  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 67 - 151
Target Start/End: Original strand, 8380991 - 8381073
Alignment:
Q  67 aatagtgaaaaagaaattgataataaaatgatttagtgtctcaaaagatgacatttttacgtatgtttgtgaccaaacactattc 151  Q
    |||| ||||||| |||||||||  ||||||||||||| | |||| | ||||||||||||  ||||| | ||||||||||||||||    
T  8380991 aataatgaaaaaaaaattgatatcaaaatgatttagtatttcaagaaatgacattttta--tatgtgtatgaccaaacactattc 8381073  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 67 - 100
Target Start/End: Original strand, 41493554 - 41493587
Alignment:
Q  67 aatagtgaaaaagaaattgataataaaatgattt 100  Q
    |||| |||||||||||||||||||||||||||||    
T  41493554 aataatgaaaaagaaattgataataaaatgattt 41493587  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 67 - 103
Target Start/End: Complemental strand, 33618441 - 33618405
Alignment:
Q  67 aatagtgaaaaagaaattgataataaaatgatttagt 103  Q
    |||||| ||||||||||| ||||||||||||||||||    
T  33618441 aatagtaaaaaagaaattaataataaaatgatttagt 33618405  T

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Target: chr8 (Bit Score: 37; Significance: 0.000000000007; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 72 - 160
Target Start/End: Complemental strand, 404010 - 403923
Alignment:
Q  72 tgaaaaagaaattgataataaaatgatttagtgtctcaaaagatgacatttttacgtatgtttgtgaccaaacactattcatttgtgtt 160  Q
    |||||||||||||||||||||||||||||||| | |||||  || |  ||||||  | ||| ||||| |||||||||||||||||||||    
T  404010 tgaaaaagaaattgataataaaatgatttagtatttcaaagaataattttttta-atgtgtgtgtgatcaaacactattcatttgtgtt 403923  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 67 - 160
Target Start/End: Original strand, 44825289 - 44825383
Alignment:
Q  67 aatagtgaaaaagaaattgataataaaatgatttagtgtctcaaaagatgacattt---ttacgtatgtttgtgaccaaacactattcatttgtgtt 160  Q
    |||| |||||||||||||||||||||||| ||||||| | |||| | ||||||| |   |||  ||||| |||| ||||||||||| ||||||||||    
T  44825289 aataatgaaaaagaaattgataataaaataatttagtatttcaagaaatgacatataaatta--tatgtgtgtgtccaaacactatgcatttgtgtt 44825383  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 120 - 160
Target Start/End: Original strand, 6048653 - 6048693
Alignment:
Q  120 tttttacgtatgtttgtgaccaaacactattcatttgtgtt 160  Q
    |||||| || ||| |||||||||||||||||||||||||||    
T  6048653 tttttatgtgtgtgtgtgaccaaacactattcatttgtgtt 6048693  T

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